Variant report

Variant	rs16840365
Chromosome Location	chr1:158550706-158550707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr1:158550590-158550868	HepG2	liver:	n/a	chr1:158550707-158550716
2	CEBPB	chr1:158550599-158550839	A549	lung:	n/a	chr1:158550707-158550716
3	CEBPB	chr1:158550555-158550871	IMR90	lung:	n/a	chr1:158550707-158550716
4	CEBPB	chr1:158550607-158550868	H1-hESC	embryonic stem cell:	n/a	chr1:158550707-158550716
5	CEBPB	chr1:158550605-158550872	K562	blood:	n/a	chr1:158550707-158550716

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:158550705-158550755	NT2-D1	testis:	n/a
2	chr1:158550705-158550755	GM12892	blood:	n/a
3	chr1:158550705-158550755	AG09319	gingival:	n/a
4	chr1:158550705-158550755	H1-hESC	embryonic stem cell:	embryo
5	chr1:158550705-158550755	HCPEpiC	choroid plexus:	n/a
6	chr1:158550705-158550755	RPTEC	kidney:	n/a
7	chr1:158550705-158550755	SAEC	small airway:	n/a
8	chr1:158550705-158550755	HMEC	breast:	n/a
9	chr1:158550705-158550755	PrEC	prostate:	n/a
10	chr1:158550705-158550755	CMK	blood:	n/a
11	chr1:158550705-158550755	HRE	kidney:	n/a
12	chr1:158550705-158550755	HUVEC	blood vessel:	n/a
13	chr1:158550705-158550755	Hela-S3	cervix:	n/a
14	chr1:158550705-158550755	SK-N-SH_RA	brain:	n/a
15	chr1:158550705-158550755	GM12878	blood:	n/a
16	chr1:158550705-158550755	HIPEpiC	eye:	n/a
17	chr1:158550705-158550755	ovcar-3	ovarian:	n/a
18	chr1:158550705-158550755	NB4	blood:	n/a
19	chr1:158550705-158550755	LNCaP	prostate:	n/a
20	chr1:158550705-158550755	HRPEpiC	eye:	n/a
21	chr1:158550705-158550755	HEK293	kidney:	embryo
22	chr1:158550705-158550755	AoSMC	blood vessel:	n/a
23	chr1:158550705-158550755	HAEpiC	amniotic membrane:	n/a
24	chr1:158550705-158550755	HCT-116	colon:	n/a
25	chr1:158550705-158550755	HepG2	liver:	n/a
26	chr1:158550705-158550755	BE2_C	brain:	n/a
27	chr1:158550705-158550755	AG10803	skin:	n/a
28	chr1:158550705-158550755	HEEpiC	esophagus:	n/a
29	chr1:158550705-158550755	Jurkat	blood:	n/a
30	chr1:158550705-158550755	AG09309	skin:	n/a
31	chr1:158550705-158550755	PANC-1	pancreas:	n/a
32	chr1:158550705-158550755	HCF	heart:	n/a
33	chr1:158550705-158550755	HPAEpiC	pulmonary alveolar:	n/a
34	chr1:158550705-158550755	K562	blood:	n/a
35	chr1:158550705-158550755	HRCEpiC	kidney:	n/a
36	chr1:158550705-158550755	Hepatocyte	liver:	n/a
37	chr1:158550705-158550755	Caco-2	colon:	n/a
38	chr1:158550705-158550755	NHDF-neo	bronchial:	n/a
39	chr1:158550705-158550755	GM06990	blood:	n/a
40	chr1:158550705-158550755	MCF-7	breast:	n/a
41	chr1:158550705-158550755	SK-N-SH	brain:	n/a
42	chr1:158550705-158550755	AG04450	lung:	fetal
43	chr1:158550705-158550755	NH-A	brain:	n/a
44	chr1:158550705-158550755	IMR90	lung:	fetal
45	chr1:158550705-158550755	A549	lung:	n/a
46	chr1:158550705-158550755	AG04449	skin:	fetal
47	chr1:158550705-158550755	SKMC	muscle:	n/a
48	chr1:158550705-158550755	BJ	skin:	n/a
49	chr1:158550705-158550755	ProgFib	skin:	n/a
50	chr1:158550705-158550755	SK-N-MC	brain:	n/a

No data

Variant related genes	Relation type
OR10X1	TF binding region
OR10X1	CpG island

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs4474244	1.00[AMR][1000 genomes]
rs57645668	1.00[AMR][1000 genomes]
rs58022143	1.00[AMR][1000 genomes]
rs58422095	1.00[AMR][1000 genomes]
rs59610694	1.00[AMR][1000 genomes]
rs59731018	1.00[AMR][1000 genomes]
rs59862467	1.00[AMR][1000 genomes]
rs6672984	1.00[AMR][1000 genomes]
rs6674669	1.00[AMR][1000 genomes]
rs73014257	1.00[AMR][1000 genomes]
rs73014258	1.00[AMR][1000 genomes]
rs73025861	1.00[AMR][1000 genomes]
rs73025865	1.00[AMR][1000 genomes]
rs73025872	1.00[AMR][1000 genomes]
rs73027706	1.00[AMR][1000 genomes]
rs73029529	1.00[AMR][1000 genomes]
rs73029560	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv547986	chr1:158520205-158556839	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3491788	chr1:158537183-158725907	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3491789	chr1:158537242-158725858	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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