Variant report

Variant	rs73029560
Chromosome Location	chr1:158489408-158489409
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16840365	1.00[AMR][1000 genomes]
rs4474244	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57645668	1.00[AMR][1000 genomes]
rs58022143	1.00[AMR][1000 genomes]
rs58422095	1.00[AMR][1000 genomes]
rs59100738	0.92[AFR][1000 genomes]
rs59610694	1.00[AMR][1000 genomes]
rs59731018	1.00[AMR][1000 genomes]
rs59862467	1.00[AMR][1000 genomes]
rs6672984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6674669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014257	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014258	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025861	1.00[AMR][1000 genomes]
rs73025865	1.00[AMR][1000 genomes]
rs73025872	1.00[AMR][1000 genomes]
rs73027706	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001046	chr1:158461563-158503338	Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv470743	chr1:158484285-158521392	Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv437202	chr1:158484378-158493154	Weak transcription Enhancers Bivalent Enhancer	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3527983	chr1:158487228-158489826	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	inside rSNPs	diseases
5	esv3399447	chr1:158487353-158489901	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158489400-158489600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links