Variant report

Variant	rs59610694
Chromosome Location	chr1:158434373-158434374
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16840365	1.00[AMR][1000 genomes]
rs4474244	1.00[AMR][1000 genomes]
rs57645668	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58022143	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58422095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59731018	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59862467	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6672984	1.00[AMR][1000 genomes]
rs6674669	1.00[AMR][1000 genomes]
rs73014257	1.00[AMR][1000 genomes]
rs73014258	1.00[AMR][1000 genomes]
rs73025861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025865	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025872	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027706	1.00[AMR][1000 genomes]
rs73029529	1.00[AMR][1000 genomes]
rs73029560	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv998569	chr1:158317392-158443389	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv947133	chr1:158431706-158440282	Strong transcription Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158431800-158435400	Weak transcription	Thymus	Thymus
2	chr1:158431800-158443200	Weak transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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