Variant report

Variant	rs6672984
Chromosome Location	chr1:158497331-158497332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16840365	1.00[AMR][1000 genomes]
rs4474244	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57645668	1.00[AMR][1000 genomes]
rs58022143	1.00[AMR][1000 genomes]
rs58422095	1.00[AMR][1000 genomes]
rs59100738	0.92[AFR][1000 genomes]
rs59610694	1.00[AMR][1000 genomes]
rs59731018	1.00[AMR][1000 genomes]
rs59862467	1.00[AMR][1000 genomes]
rs6674669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014257	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014258	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025861	1.00[AMR][1000 genomes]
rs73025865	1.00[AMR][1000 genomes]
rs73025872	1.00[AMR][1000 genomes]
rs73027706	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001046	chr1:158461563-158503338	Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv470743	chr1:158484285-158521392	Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv547982	chr1:158489945-158511445	Enhancers Weak transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv946441	chr1:158493644-158505509	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2829881	chr1:158493726-158497572	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv547983	chr1:158495464-158523671	Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158491800-158497400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr1:158495800-158497400	Enhancers	Dnd41	blood
3	chr1:158496800-158498200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr1:158497000-158498000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:158497200-158497600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:158497200-158498000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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