Variant report

Variant	rs73029529
Chromosome Location	chr1:158479828-158479829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16840365	1.00[AMR][1000 genomes]
rs4474244	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57645668	1.00[AMR][1000 genomes]
rs58022143	1.00[AMR][1000 genomes]
rs58422095	1.00[AMR][1000 genomes]
rs59100738	0.92[AFR][1000 genomes]
rs59610694	1.00[AMR][1000 genomes]
rs59731018	1.00[AMR][1000 genomes]
rs59862467	1.00[AMR][1000 genomes]
rs6672984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6674669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014257	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014258	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025861	1.00[AMR][1000 genomes]
rs73025865	1.00[AMR][1000 genomes]
rs73025872	1.00[AMR][1000 genomes]
rs73027706	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001046	chr1:158461563-158503338	Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158479600-158480000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr1:158479600-158480200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:158479600-158480200	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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