Variant report
Variant | rs73014258 |
---|---|
Chromosome Location | chr1:158539807-158539808 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:158532774..158535778-chr1:158538255..158542320,4 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000186440 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs16840365 | 1.00[AMR][1000 genomes] |
rs4474244 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs57645668 | 1.00[AMR][1000 genomes] |
rs58022143 | 1.00[AMR][1000 genomes] |
rs58422095 | 1.00[AMR][1000 genomes] |
rs59100738 | 1.00[AFR][1000 genomes] |
rs59610694 | 1.00[AMR][1000 genomes] |
rs59731018 | 1.00[AMR][1000 genomes] |
rs59862467 | 1.00[AMR][1000 genomes] |
rs6672984 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6674669 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73014257 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73025861 | 1.00[AMR][1000 genomes] |
rs73025865 | 1.00[AMR][1000 genomes] |
rs73025872 | 1.00[AMR][1000 genomes] |
rs73027706 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73029529 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73029560 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1013656 | chr1:158516984-158542929 | Enhancers Flanking Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
2 | nsv1015106 | chr1:158516984-158545423 | Enhancers Flanking Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv547986 | chr1:158520205-158556839 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | esv3491788 | chr1:158537183-158725907 | Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
5 | esv3491789 | chr1:158537242-158725858 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
No data |