Variant report

Variant	rs16873529
Chromosome Location	chr5:35310337-35310338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10512631	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16873191	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16873210	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16873766	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17438666	0.92[EUR][1000 genomes]
rs17585046	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17585060	0.92[EUR][1000 genomes]
rs26196	0.92[EUR][1000 genomes]
rs56967971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58975450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59862556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61687847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73075798	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73087009	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087019	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35308200-35310400	Enhancers	Fetal Brain Female	brain
2	chr5:35308600-35310400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:35309000-35311200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr5:35309200-35310400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:35309200-35310400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:35309600-35312800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:35310000-35310400	Enhancers	Fetal Brain Male	brain
8	chr5:35310000-35310600	Enhancers	Brain Germinal Matrix	brain
9	chr5:35310200-35313200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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