Variant report

Variant	rs73087012
Chromosome Location	chr5:35306896-35306897
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35306548..35307429-chr5:35476806..35477517,2	MCF-7	breast:
2	chr5:35230520..35231055-chr5:35306448..35307417,2	MCF-7	breast:
3	chr5:35306537..35308701-chr5:35323913..35326409,2	MCF-7	breast:
4	chr5:35304974..35307346-chr5:35309952..35312564,2	MCF-7	breast:
5	chr15:69093279..69095478-chr5:35305385..35307435,2	MCF-7	breast:
6	chr5:35304644..35307097-chr5:35333687..35335958,2	MCF-7	breast:
7	chr5:35227956..35231648-chr5:35306596..35309604,5	MCF-7	breast:
8	chr5:35301667..35303346-chr5:35305142..35308054,2	MCF-7	breast:
9	chr5:35227369..35231547-chr5:35305880..35313483,7	MCF-7	breast:
10	chr5:35273068..35277426-chr5:35305391..35308991,5	MCF-7	breast:
11	chr5:35292717..35295052-chr5:35306592..35308277,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10512631	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16873191	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16873210	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16873529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16873766	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17438666	0.92[EUR][1000 genomes]
rs17585046	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17585060	0.92[EUR][1000 genomes]
rs26196	0.92[EUR][1000 genomes]
rs56967971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58975450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59862556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61687847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73075798	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73087009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087019	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35303600-35308400	Weak transcription	GM12878-XiMat	blood
2	chr5:35303800-35308600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:35305000-35307000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:35305200-35308600	Weak transcription	Ovary	ovary
5	chr5:35306000-35308600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:35306600-35307000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:35306600-35307000	Enhancers	Pancreas	Pancrea
8	chr5:35306800-35307000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:35306800-35307400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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