Variant report

Variant	rs73087009
Chromosome Location	chr5:35305633-35305634
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10512631	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16873191	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16873210	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16873529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16873766	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17438666	0.92[EUR][1000 genomes]
rs17585046	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17585060	0.92[EUR][1000 genomes]
rs26196	0.92[EUR][1000 genomes]
rs56967971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58975450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59862556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61687847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73075798	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73087012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087019	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv597811	chr5:35270560-35305669	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35303600-35308400	Weak transcription	GM12878-XiMat	blood
2	chr5:35303800-35308600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:35305000-35307000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:35305200-35306000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:35305200-35308600	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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