Variant report

No.	Distal block	Cell Line	Cell type
1	chr5:35306537..35308701-chr5:35323913..35326409,2	MCF-7	breast:
2	chr5:35307098..35309352-chr5:35310919..35312593,2	MCF-7	breast:
3	chr5:35227956..35231648-chr5:35306596..35309604,5	MCF-7	breast:
4	chr5:35227369..35231547-chr5:35305880..35313483,7	MCF-7	breast:
5	chr5:35273068..35277426-chr5:35305391..35308991,5	MCF-7	breast:
6	chr5:35303499..35305764-chr5:35307692..35309254,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113494	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10512631	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16873191	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16873210	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16873529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16873766	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17438666	0.92[EUR][1000 genomes]
rs17585046	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17585060	0.92[EUR][1000 genomes]
rs26196	0.92[EUR][1000 genomes]
rs56967971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59862556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61687847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73075798	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73087009	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087020	0.89[AFR][1000 genomes]
rs73087022	0.89[AFR][1000 genomes]
rs73087024	0.89[AFR][1000 genomes]
rs73087031	1.00[AFR][1000 genomes]
rs73087035	1.00[AFR][1000 genomes]
rs73087037	1.00[AFR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35303800-35308600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:35305200-35308600	Weak transcription	Ovary	ovary
3	chr5:35306000-35308600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:35307000-35308600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:35307600-35308600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:35307800-35309000	Enhancers	Fetal Brain Male	brain
7	chr5:35308200-35309400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr5:35308200-35310400	Enhancers	Fetal Brain Female	brain
9	chr5:35308400-35308600	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr5:35308400-35308800	Enhancers	Brain Anterior Caudate	brain
11	chr5:35308400-35308800	Enhancers	Brain Germinal Matrix	brain
12	chr5:35308400-35308800	Enhancers	GM12878-XiMat	blood
13	chr5:35308400-35309000	Enhancers	Brain Hippocampus Middle	brain
14	chr5:35308400-35309000	Enhancers	Pancreas	Pancrea
15	chr5:35308400-35309200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:35308400-35309200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr5:35308400-35309200	Enhancers	Brain Cingulate Gyrus	brain

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