Variant report

Variant	rs16886806
Chromosome Location	chr6:76382862-76382863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:76373474..76375579-chr6:76380760..76383330,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1091353	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1145707	1.00[CEU][hapmap]
rs1391559	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1577587	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1582100	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16886827	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17529743	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2027188	1.00[EUR][1000 genomes]
rs2297698	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs276689	0.95[EUR][1000 genomes]
rs2842534	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2842565	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2842566	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2842567	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2842568	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs490948	0.95[EUR][1000 genomes]
rs498753	1.00[EUR][1000 genomes]
rs499527	1.00[EUR][1000 genomes]
rs507662	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs511900	1.00[EUR][1000 genomes]
rs525178	1.00[EUR][1000 genomes]
rs572118	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs59340910	0.90[EUR][1000 genomes]
rs603301	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs621530	1.00[EUR][1000 genomes]
rs657638	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs661612	1.00[EUR][1000 genomes]
rs664019	0.87[EUR][1000 genomes]
rs671806	0.91[EUR][1000 genomes]
rs678985	1.00[EUR][1000 genomes]
rs696645	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73753520	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs775057	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs775058	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs775061	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs775073	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs775074	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs775076	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9447508	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027915	chr6:75893542-76510113	Active TSS Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv538311	chr6:75893542-76510113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
3	nsv1022428	chr6:76023118-76575620	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
4	nsv538312	chr6:76023118-76575620	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
5	nsv1032245	chr6:76045537-76545703	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
6	nsv538313	chr6:76045537-76545703	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
7	nsv1019328	chr6:76154751-76604197	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
8	nsv538314	chr6:76154751-76604197	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv1023331	chr6:76238459-76482117	Strong transcription ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
10	nsv538315	chr6:76238459-76482117	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
11	nsv1017542	chr6:76238459-76537447	Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
12	nsv1031745	chr6:76257913-76493355	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
13	nsv538316	chr6:76257913-76493355	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
14	nsv533100	chr6:76257914-76493354	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
15	nsv1023749	chr6:76287578-76482117	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
16	nsv538317	chr6:76287578-76482117	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
17	nsv1021090	chr6:76306100-76759397	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
18	nsv538318	chr6:76306100-76759397	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
19	nsv886183	chr6:76320846-76399539	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
20	nsv886184	chr6:76320846-76462711	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
21	nsv886185	chr6:76320846-76498109	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
22	nsv886186	chr6:76328955-76469115	Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
23	nsv1032961	chr6:76343575-76788852	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
24	nsv932201	chr6:76365548-77219650	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
25	nsv522814	chr6:76375321-76405700	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:76320200-76391600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:76330600-76390400	Weak transcription	Gastric	stomach
3	chr6:76332800-76389000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:76333200-76391000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:76335400-76388800	Weak transcription	Small Intestine	intestine
6	chr6:76339400-76402000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:76340200-76390400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:76340400-76390400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:76342200-76387200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:76342800-76391200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:76351400-76390400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:76354600-76391200	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:76356800-76391800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:76357200-76390000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:76358200-76388000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:76358200-76392200	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:76358400-76391000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:76362000-76387600	Weak transcription	Esophagus	oesophagus
19	chr6:76362000-76389800	Weak transcription	Spleen	Spleen
20	chr6:76364400-76392200	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr6:76364800-76392400	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:76366400-76392400	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr6:76366600-76392400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:76366800-76391000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:76368000-76389800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr6:76368200-76392200	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr6:76368400-76384600	Strong transcription	Fetal Thymus	thymus
28	chr6:76368600-76391800	Strong transcription	Fetal Lung	lung
29	chr6:76368800-76392000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr6:76370200-76391800	Weak transcription	Fetal Heart	heart
31	chr6:76370600-76389800	Weak transcription	Aorta	Aorta
32	chr6:76371000-76386200	Weak transcription	Psoas Muscle	Psoas
33	chr6:76371200-76383000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:76371200-76383200	Weak transcription	Left Ventricle	heart
35	chr6:76371200-76383200	Weak transcription	Pancreas	Pancrea
36	chr6:76371200-76386000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:76371200-76388800	Weak transcription	Right Ventricle	heart
38	chr6:76371400-76383600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr6:76371400-76385600	Weak transcription	Brain Cingulate Gyrus	brain
40	chr6:76371400-76385800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr6:76371400-76385800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:76371400-76387200	Weak transcription	Brain Angular Gyrus	brain
43	chr6:76371400-76387200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr6:76371400-76388200	Weak transcription	Fetal Brain Male	brain
45	chr6:76371600-76383400	Weak transcription	Brain Hippocampus Middle	brain
46	chr6:76371600-76388800	Weak transcription	Lung	lung
47	chr6:76372200-76383400	Weak transcription	Ovary	ovary
48	chr6:76372800-76385800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr6:76373200-76387200	Weak transcription	HSMMtube	muscle
50	chr6:76374000-76384400	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links