Variant report

Variant	rs16894241
Chromosome Location	chr6:27108197-27108198
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26120892..26123580-chr6:27107524..27109236,2	K562	blood:
2	chr6:27103857..27108544-chr6:27789458..27794450,6	K562	blood:
3	chr6:26196890..26209578-chr6:27096615..27108451,46	K562	blood:
4	chr6:27094943..27118570-chr6:27854106..27868030,101	K562	blood:
5	chr6:26660140..26662715-chr6:27107462..27109836,2	K562	blood:
6	chr6:26197700..26201009-chr6:27106361..27108760,3	K562	blood:
7	chr6:26248693..26251419-chr6:27106113..27108682,2	K562	blood:
8	chr6:26029982..26034393-chr6:27104962..27111668,7	K562	blood:
9	chr6:26214207..26218801-chr6:27106442..27111603,7	MCF-7	breast:
10	chr6:26595534..26598582-chr6:27105401..27109406,3	K562	blood:
11	chr6:27093465..27120217-chr6:27768366..27817187,256	K562	blood:
12	chr6:27107762..27109268-chr6:27804988..27807369,2	K562	blood:
13	chr6:27104887..27109324-chr6:27780147..27783327,4	MCF-7	breast:
14	chr6:26285002..26288145-chr6:27106372..27109970,3	K562	blood:
15	chr6:26283994..26286611-chr6:27107425..27109843,2	MCF-7	breast:
16	chr6:27105394..27120060-chr6:27855994..27866393,42	K562	blood:
17	chr6:26162758..26165720-chr6:27106802..27109044,2	MCF-7	breast:
18	chr6:26029982..26033364-chr6:27104962..27109285,6	K562	blood:
19	chr6:26056111..26057808-chr6:27108105..27110982,3	K562	blood:
20	chr6:26204311..26207640-chr6:27105695..27109383,4	K562	blood:
21	chr6:27093369..27111594-chr6:27770152..27782376,64	K562	blood:
22	chr6:26214554..26217001-chr6:27106278..27109179,2	MCF-7	breast:
23	chr6:27105570..27109142-chr6:27832678..27836176,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000184348	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000182611	Chromatin interaction
ENSG00000146109	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000137259	Chromatin interaction
ENSG00000217275	Chromatin interaction
ENSG00000197238	Chromatin interaction
ENSG00000198374	Chromatin interaction
ENSG00000158406	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000197914	Chromatin interaction
ENSG00000198518	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000184357	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000217159	Chromatin interaction
ENSG00000238610	Chromatin interaction
ENSG00000196374	Chromatin interaction
ENSG00000187837	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000124693	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000256316	Chromatin interaction
ENSG00000197846	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10484392	1.00[AMR][1000 genomes]
rs10484394	1.00[AMR][1000 genomes]
rs1102566	1.00[AMR][1000 genomes]
rs1102568	1.00[AMR][1000 genomes]
rs11753245	1.00[AMR][1000 genomes]
rs11753378	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11753580	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11755519	1.00[AMR][1000 genomes]
rs11755651	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11755813	1.00[AMR][1000 genomes]
rs11756304	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11757963	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11759167	1.00[AMR][1000 genomes]
rs11759771	1.00[AMR][1000 genomes]
rs16894520	1.00[AMR][1000 genomes]
rs16895602	1.00[AMR][1000 genomes]
rs16897417	1.00[AMR][1000 genomes]
rs2021278	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2022271	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2092113	1.00[AMR][1000 genomes]
rs55656206	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55867104	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55925824	1.00[AMR][1000 genomes]
rs56141916	1.00[AMR][1000 genomes]
rs56156722	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57603020	1.00[AMR][1000 genomes]
rs58130043	1.00[AMR][1000 genomes]
rs58265076	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58900251	1.00[AMR][1000 genomes]
rs58977511	1.00[AMR][1000 genomes]
rs59757260	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60259667	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61185098	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61392315	1.00[AMR][1000 genomes]
rs73737997	1.00[AMR][1000 genomes]
rs73737999	1.00[AMR][1000 genomes]
rs73738226	1.00[AMR][1000 genomes]
rs73738236	1.00[AMR][1000 genomes]
rs73738237	1.00[AMR][1000 genomes]
rs73738707	1.00[AMR][1000 genomes]
rs73738713	1.00[AMR][1000 genomes]
rs73738717	1.00[AMR][1000 genomes]
rs73738718	1.00[AMR][1000 genomes]
rs73738731	1.00[AMR][1000 genomes]
rs73738732	1.00[AMR][1000 genomes]
rs73738733	1.00[AMR][1000 genomes]
rs73738734	1.00[AMR][1000 genomes]
rs73738738	1.00[AMR][1000 genomes]
rs73738739	1.00[AMR][1000 genomes]
rs73738741	1.00[AMR][1000 genomes]
rs73738749	1.00[AMR][1000 genomes]
rs73739510	1.00[AMR][1000 genomes]
rs73739515	1.00[AMR][1000 genomes]
rs73739517	1.00[AMR][1000 genomes]
rs73739519	1.00[AMR][1000 genomes]
rs73739521	1.00[AMR][1000 genomes]
rs73739522	1.00[AMR][1000 genomes]
rs73739531	1.00[AMR][1000 genomes]
rs73739534	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739545	1.00[AMR][1000 genomes]
rs73739557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739578	1.00[AMR][1000 genomes]
rs73739581	1.00[AMR][1000 genomes]
rs73739582	1.00[AMR][1000 genomes]
rs73739586	1.00[AMR][1000 genomes]
rs73739587	1.00[AMR][1000 genomes]
rs73739589	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739591	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739594	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739595	1.00[AMR][1000 genomes]
rs73739598	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739600	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740276	0.80[AFR][1000 genomes]
rs73740278	1.00[AMR][1000 genomes]
rs73740404	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740405	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740406	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740409	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740414	1.00[AMR][1000 genomes]
rs73740432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7449898	1.00[AMR][1000 genomes]
rs7755679	1.00[AMR][1000 genomes]
rs858966	1.00[AMR][1000 genomes]
rs858971	1.00[AMR][1000 genomes]
rs9366681	1.00[AMR][1000 genomes]
rs996246	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1029124	chr6:26825468-27109774	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	244 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27101800-27112800	Weak transcription	HSMMtube	muscle
2	chr6:27102200-27112600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:27105800-27108200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:27106200-27109200	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr6:27106400-27108400	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr6:27106600-27108200	Active TSS	Fetal Stomach	stomach
7	chr6:27106600-27108800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:27106600-27108800	Active TSS	K562	blood
9	chr6:27106600-27110200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:27106800-27108200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
11	chr6:27106800-27108200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:27106800-27108200	Active TSS	Brain Germinal Matrix	brain
13	chr6:27106800-27108200	Active TSS	Duodenum Mucosa	Duodenum
14	chr6:27106800-27108200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
15	chr6:27106800-27108200	Active TSS	Fetal Kidney	kidney
16	chr6:27106800-27108200	Active TSS	Rectal Mucosa Donor 31	rectum
17	chr6:27106800-27108200	Flanking Active TSS	Thymus	Thymus
18	chr6:27106800-27108200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr6:27106800-27108400	Flanking Active TSS	HUVEC	blood vessel
20	chr6:27106800-27108400	Active TSS	NHLF	lung
21	chr6:27106800-27109000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:27106800-27109000	Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr6:27106800-27109400	Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr6:27106800-27109400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:27106800-27109800	Active TSS	H1 Cell Line	embryonic stem cell
26	chr6:27106800-27109800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:27106800-27109800	Active TSS	iPS-15b Cell Line	embryonic stem cell
28	chr6:27106800-27110000	Active TSS	A549	lung
29	chr6:27107000-27108200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:27107000-27108200	Active TSS	Primary B cells from peripheral blood	blood
31	chr6:27107000-27108200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:27107000-27108200	Active TSS	Brain Hippocampus Middle	brain
33	chr6:27107000-27108200	Active TSS	Fetal Intestine Small	intestine
34	chr6:27107000-27108200	Active TSS	Fetal Lung	lung
35	chr6:27107000-27108800	Active TSS	HUES48 Cell Line	embryonic stem cell
36	chr6:27107000-27108800	Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr6:27107000-27109000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:27107000-27109000	Active TSS	Dnd41	blood
39	chr6:27107000-27109200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:27107000-27109400	Active TSS	GM12878-XiMat	blood
41	chr6:27107000-27109400	Active TSS	Hela-S3	cervix
42	chr6:27107000-27109600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr6:27107000-27109800	Active TSS	H9 Cell Line	embryonic stem cell
44	chr6:27107000-27110000	Active TSS	iPS-18 Cell Line	embryonic stem cell
45	chr6:27107000-27110000	Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr6:27107400-27108200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
47	chr6:27107400-27108200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr6:27107400-27108200	Flanking Active TSS	Fetal Thymus	thymus
49	chr6:27107400-27108400	Flanking Active TSS	Primary hematopoietic stem cells	blood
50	chr6:27107400-27109800	Active TSS	HUES6 Cell Line	embryonic stem cell

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