Variant report

Variant	rs73738237
Chromosome Location	chr6:27203149-27203150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27202802..27205636-chr6:27246312..27248576,2	K562	blood:
2	chr6:27202945..27207226-chr6:27207417..27209319,3	MCF-7	breast:
3	chr6:27201297..27203318-chr6:27510995..27513466,2	K562	blood:
4	chr6:27202839..27205784-chr6:27218502..27221340,2	MCF-7	breast:
5	chr6:27202749..27204748-chr6:27656090..27658081,2	K562	blood:
6	chr6:27195411..27200167-chr6:27200252..27206108,10	K562	blood:
7	chr6:27202793..27205755-chr6:27355430..27357171,2	K562	blood:
8	chr6:27203048..27205771-chr6:27439622..27441138,2	K562	blood:
9	chr6:27201796..27205755-chr6:27355401..27357171,3	K562	blood:
10	chr6:27201566..27203350-chr6:27258009..27260418,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000096654	Chromatin interaction
ENSG00000112812	Chromatin interaction
ENSG00000124613	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10484392	1.00[AMR][1000 genomes]
rs10484394	1.00[AMR][1000 genomes]
rs1102566	1.00[AMR][1000 genomes]
rs1102568	1.00[AMR][1000 genomes]
rs11753245	1.00[AMR][1000 genomes]
rs11753378	1.00[AMR][1000 genomes]
rs11753580	1.00[AMR][1000 genomes]
rs11755519	1.00[AMR][1000 genomes]
rs11755651	1.00[AMR][1000 genomes]
rs11755813	1.00[AMR][1000 genomes]
rs11756304	1.00[AMR][1000 genomes]
rs11757963	1.00[AMR][1000 genomes]
rs11759167	1.00[AMR][1000 genomes]
rs11759771	1.00[AMR][1000 genomes]
rs16894241	1.00[AMR][1000 genomes]
rs16894520	1.00[AMR][1000 genomes]
rs16895602	1.00[AMR][1000 genomes]
rs16897417	1.00[AMR][1000 genomes]
rs2021278	1.00[AMR][1000 genomes]
rs2022271	1.00[AMR][1000 genomes]
rs2092113	1.00[AMR][1000 genomes]
rs55656206	1.00[AMR][1000 genomes]
rs55867104	1.00[AMR][1000 genomes]
rs55925824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56141916	1.00[AMR][1000 genomes]
rs56156722	1.00[AMR][1000 genomes]
rs57603020	1.00[AMR][1000 genomes]
rs58130043	1.00[AMR][1000 genomes]
rs58265076	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58900251	1.00[AMR][1000 genomes]
rs58977511	1.00[AMR][1000 genomes]
rs59757260	1.00[AMR][1000 genomes]
rs60259667	1.00[AMR][1000 genomes]
rs61185098	1.00[AMR][1000 genomes]
rs61392315	1.00[AMR][1000 genomes]
rs73737997	1.00[AMR][1000 genomes]
rs73737999	1.00[AMR][1000 genomes]
rs73738226	1.00[AMR][1000 genomes]
rs73738236	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73738707	1.00[AMR][1000 genomes]
rs73738713	1.00[AMR][1000 genomes]
rs73738717	1.00[AMR][1000 genomes]
rs73738718	1.00[AMR][1000 genomes]
rs73738731	1.00[AMR][1000 genomes]
rs73738732	1.00[AMR][1000 genomes]
rs73738733	1.00[AMR][1000 genomes]
rs73738734	1.00[AMR][1000 genomes]
rs73738738	1.00[AMR][1000 genomes]
rs73738739	1.00[AMR][1000 genomes]
rs73738741	1.00[AMR][1000 genomes]
rs73738749	1.00[AMR][1000 genomes]
rs73739510	1.00[AMR][1000 genomes]
rs73739515	1.00[AMR][1000 genomes]
rs73739517	1.00[AMR][1000 genomes]
rs73739519	1.00[AMR][1000 genomes]
rs73739521	1.00[AMR][1000 genomes]
rs73739522	1.00[AMR][1000 genomes]
rs73739531	1.00[AMR][1000 genomes]
rs73739534	1.00[AMR][1000 genomes]
rs73739545	1.00[AMR][1000 genomes]
rs73739557	1.00[AMR][1000 genomes]
rs73739578	1.00[AMR][1000 genomes]
rs73739581	1.00[AMR][1000 genomes]
rs73739582	1.00[AMR][1000 genomes]
rs73739586	1.00[AMR][1000 genomes]
rs73739587	1.00[AMR][1000 genomes]
rs73739589	1.00[AMR][1000 genomes]
rs73739591	1.00[AMR][1000 genomes]
rs73739594	1.00[AMR][1000 genomes]
rs73739595	1.00[AMR][1000 genomes]
rs73739598	1.00[AMR][1000 genomes]
rs73739600	1.00[AMR][1000 genomes]
rs73740276	0.95[AFR][1000 genomes]
rs73740278	1.00[AMR][1000 genomes]
rs73740404	1.00[AMR][1000 genomes]
rs73740405	1.00[AMR][1000 genomes]
rs73740406	1.00[AMR][1000 genomes]
rs73740409	1.00[AMR][1000 genomes]
rs73740414	1.00[AMR][1000 genomes]
rs73740432	1.00[AMR][1000 genomes]
rs7449898	1.00[AMR][1000 genomes]
rs7755679	1.00[AMR][1000 genomes]
rs858966	1.00[AMR][1000 genomes]
rs858971	1.00[AMR][1000 genomes]
rs9366681	1.00[AMR][1000 genomes]
rs996246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1017328	chr6:27177147-27369588	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27199000-27205600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:27201400-27203800	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr6:27202000-27203800	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr6:27202400-27203600	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:27202400-27204200	Active TSS	K562	blood
6	chr6:27202600-27203400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:27202600-27203400	Active TSS	GM12878-XiMat	blood
8	chr6:27202600-27203600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr6:27202600-27203600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:27202600-27203600	Active TSS	NHEK	skin
11	chr6:27202600-27203800	Active TSS	H1 Cell Line	embryonic stem cell
12	chr6:27202600-27203800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:27202600-27203800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:27202800-27203200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:27202800-27203200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:27202800-27203200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
17	chr6:27202800-27203200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
18	chr6:27202800-27203200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
19	chr6:27202800-27203200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:27202800-27203200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:27202800-27203200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:27202800-27203200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:27202800-27203200	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
24	chr6:27202800-27203200	Flanking Active TSS	HMEC	breast
25	chr6:27202800-27203200	Bivalent/Poised TSS	HUVEC	blood vessel
26	chr6:27202800-27203200	Active TSS	NHLF	lung
27	chr6:27202800-27203400	Active TSS	HSMMtube	muscle
28	chr6:27202800-27203600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:27202800-27203600	Active TSS	iPS-15b Cell Line	embryonic stem cell
30	chr6:27202800-27203600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:27202800-27203600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:27202800-27203600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:27202800-27203600	Active TSS	A549	lung
34	chr6:27202800-27203600	Active TSS	HSMM	muscle
35	chr6:27202800-27203800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr6:27202800-27203800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:27202800-27203800	Active TSS	iPS-18 Cell Line	embryonic stem cell
38	chr6:27202800-27203800	Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chr6:27202800-27203800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr6:27202800-27203800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr6:27202800-27204000	Enhancers	HepG2	liver
42	chr6:27202800-27204400	Active TSS	H9 Cell Line	embryonic stem cell
43	chr6:27202800-27205600	Active TSS	HUES6 Cell Line	embryonic stem cell
44	chr6:27203000-27203200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
45	chr6:27203000-27203200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
46	chr6:27203000-27203200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
47	chr6:27203000-27203200	Flanking Bivalent TSS/Enh	Primary T killer memory cells from peripheral blood	blood
48	chr6:27203000-27203200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:27203000-27203200	Bivalent Enhancer	Fetal Intestine Small	intestine
50	chr6:27203000-27203200	Active TSS	Osteobl	bone

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