Variant report

Variant	rs73740409
Chromosome Location	chr6:27126197-27126198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27124529..27127097-chr6:27791591..27794445,2	K562	blood:
2	chr6:27094600..27095740-chr6:27125386..27126369,4	K562	blood:
3	chr6:27124582..27127541-chr6:27758021..27760797,2	K562	blood:
4	chr6:27123211..27127154-chr6:27858700..27862425,3	K562	blood:
5	chr6:27124529..27126942-chr6:27720154..27721836,2	K562	blood:
6	chr6:27111360..27127716-chr6:27768319..27787545,69	MCF-7	breast:
7	chr6:26155627..26158355-chr6:27123950..27127373,3	K562	blood:
8	chr6:27124141..27131442-chr6:27773840..27780959,15	K562	blood:
9	chr6:27126120..27127809-chr6:27774991..27777452,2	K562	blood:
10	chr6:27124780..27127221-chr6:27160550..27163070,2	K562	blood:
11	chr6:27124335..27127582-chr6:27143975..27147070,5	MCF-7	breast:
12	chr6:27124460..27128154-chr6:27128397..27131899,6	MCF-7	breast:
13	chr6:26239620..26242431-chr6:27124638..27127382,2	MCF-7	breast:
14	chr6:26102621..26104943-chr6:27124339..27126497,2	K562	blood:
15	chr6:27124395..27126679-chr6:27463309..27464874,2	K562	blood:
16	chr6:27114666..27115358-chr6:27125576..27126206,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000168298	Chromatin interaction
ENSG00000197238	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000197061	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000182611	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000196374	Chromatin interaction
ENSG00000198327	Chromatin interaction
ENSG00000185130	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10484392	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10484394	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1102566	1.00[AMR][1000 genomes]
rs1102568	1.00[AMR][1000 genomes]
rs11753245	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11753378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11753580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11755519	1.00[AMR][1000 genomes]
rs11755651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11755813	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11756304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11757963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11759167	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11759771	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894241	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894520	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16895602	1.00[AMR][1000 genomes]
rs16897417	1.00[AMR][1000 genomes]
rs2021278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2022271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2092113	1.00[AMR][1000 genomes]
rs55656206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55867104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55925824	1.00[AMR][1000 genomes]
rs56065824	0.81[AFR][1000 genomes]
rs56141916	1.00[AMR][1000 genomes]
rs56156722	1.00[AMR][1000 genomes]
rs57603020	1.00[AMR][1000 genomes]
rs58130043	1.00[AMR][1000 genomes]
rs58265076	1.00[AMR][1000 genomes]
rs58900251	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58977511	1.00[AMR][1000 genomes]
rs59757260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60259667	1.00[AMR][1000 genomes]
rs61185098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61392315	1.00[AMR][1000 genomes]
rs73737997	1.00[AMR][1000 genomes]
rs73737999	1.00[AMR][1000 genomes]
rs73738226	1.00[AMR][1000 genomes]
rs73738236	1.00[AMR][1000 genomes]
rs73738237	1.00[AMR][1000 genomes]
rs73738707	1.00[AMR][1000 genomes]
rs73738713	1.00[AMR][1000 genomes]
rs73738717	1.00[AMR][1000 genomes]
rs73738718	1.00[AMR][1000 genomes]
rs73738731	1.00[AMR][1000 genomes]
rs73738732	1.00[AMR][1000 genomes]
rs73738733	1.00[AMR][1000 genomes]
rs73738734	1.00[AMR][1000 genomes]
rs73738738	1.00[AMR][1000 genomes]
rs73738739	1.00[AMR][1000 genomes]
rs73738741	1.00[AMR][1000 genomes]
rs73738749	1.00[AMR][1000 genomes]
rs73739510	1.00[AMR][1000 genomes]
rs73739515	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739517	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739519	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739521	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739522	1.00[AMR][1000 genomes]
rs73739531	1.00[AMR][1000 genomes]
rs73739534	1.00[AMR][1000 genomes]
rs73739545	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739557	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739578	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739581	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739582	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739586	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739587	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739595	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740278	1.00[AMR][1000 genomes]
rs73740404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740414	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740432	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7449898	1.00[AMR][1000 genomes]
rs7755679	1.00[AMR][1000 genomes]
rs858966	1.00[AMR][1000 genomes]
rs858971	1.00[AMR][1000 genomes]
rs9366681	1.00[AMR][1000 genomes]
rs996246	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27124800-27126200	Active TSS	H1 Cell Line	embryonic stem cell
2	chr6:27124800-27126200	Active TSS	H9 Cell Line	embryonic stem cell
3	chr6:27124800-27126200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:27124800-27126200	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr6:27124800-27126200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:27124800-27126400	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr6:27124800-27126400	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr6:27125000-27126200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr6:27125000-27126200	Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr6:27125000-27126200	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr6:27125000-27126200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:27125000-27126200	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr6:27125000-27126200	Flanking Active TSS	Primary B cells from peripheral blood	blood
14	chr6:27125000-27126200	Active TSS	Primary T killer memory cells from peripheral blood	blood
15	chr6:27125000-27126200	Flanking Active TSS	Adipose Nuclei	Adipose
16	chr6:27125000-27126200	Active TSS	Brain Cingulate Gyrus	brain
17	chr6:27125000-27126200	Active TSS	Colonic Mucosa	Colon
18	chr6:27125000-27126200	Active TSS	Fetal Intestine Large	intestine
19	chr6:27125000-27126200	Active TSS	A549	lung
20	chr6:27125000-27126200	Active TSS	Hela-S3	cervix
21	chr6:27125200-27126200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr6:27125200-27126200	Flanking Active TSS	Duodenum Mucosa	Duodenum
23	chr6:27125600-27126200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:27125600-27126200	Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr6:27125600-27126200	Enhancers	Pancreas	Pancrea
26	chr6:27125600-27126200	Active TSS	Rectal Smooth Muscle	rectum
27	chr6:27125600-27126200	Active TSS	Thymus	Thymus
28	chr6:27125600-27126400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr6:27125800-27126200	Active TSS	iPS-18 Cell Line	embryonic stem cell
30	chr6:27125800-27126200	Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr6:27125800-27126200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:27125800-27126200	Active TSS	Primary hematopoietic stem cells short term culture	blood
33	chr6:27125800-27126200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:27125800-27126200	Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr6:27125800-27126200	Active TSS	Primary T helper cells fromperipheralblood	blood
36	chr6:27125800-27126200	Enhancers	Brain Substantia Nigra	brain
37	chr6:27125800-27126200	Active TSS	Colon Smooth Muscle	Colon
38	chr6:27125800-27126200	Enhancers	Fetal Intestine Small	intestine
39	chr6:27125800-27126200	Flanking Active TSS	HepG2	liver
40	chr6:27125800-27126200	Active TSS	HMEC	breast
41	chr6:27125800-27126200	Active TSS	Osteobl	bone
42	chr6:27125800-27126400	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr6:27125800-27126400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:27125800-27128800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr6:27125800-27128800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:27125800-27129000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:27126000-27126200	Enhancers	Primary T cells from cord blood	blood
48	chr6:27126000-27126200	Enhancers	Primary T cells fromperipheralblood	blood
49	chr6:27126000-27126200	Flanking Active TSS	Primary hematopoietic stem cells	blood
50	chr6:27126000-27126200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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