Variant report

Variant	rs73739595
Chromosome Location	chr6:27100578-27100579
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:452)
CpG islands
(count:61)
Chromatin interactive
region (count:117)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:452 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr6:27099575-27101836	K562	blood:	n/a	chr6:27100770-27100781 chr6:27100767-27100782 chr6:27100769-27100786 chr6:27100771-27100780 chr6:27100772-27100779 chr6:27100772-27100783 chr6:27100772-27100779 chr6:27100772-27100779 chr6:27100769-27100786 chr6:27100771-27100779 chr6:27099754-27099763 chr6:27100772-27100783 chr6:27100772-27100783 chr6:27100768-27100782 chr6:27100880-27100892 chr6:27099714-27099721
2	RDBP	chr6:27100223-27101806	K562	blood:	n/a	n/a
3	POLR2A	chr6:27098755-27102444	GM12892	blood:	n/a	n/a
4	FOSL2	chr6:27100160-27100784	A549	lung:	n/a	chr6:27100646-27100655
5	KAP1	chr6:27100381-27100696	U2OS	brain:	n/a	n/a
6	MYC	chr6:27100397-27100850	MCF10A-Er-Src	breast:	n/a	chr6:27100610-27100619
7	POU2F2	chr6:27099488-27101967	GM12878	blood:	n/a	chr6:27100612-27100624 chr6:27100613-27100621 chr6:27100613-27100622 chr6:27099862-27099873 chr6:27100614-27100621 chr6:27100606-27100627 chr6:27100610-27100625 chr6:27100606-27100628 chr6:27100611-27100624 chr6:27100613-27100623 chr6:27100608-27100626 chr6:27100611-27100622 chr6:27100613-27100623 chr6:27100612-27100622 chr6:27100610-27100624
8	ATF3	chr6:27099561-27101048	A549	lung:	n/a	chr6:27100666-27100679 chr6:27100665-27100678
9	POLR2A	chr6:27099471-27102442	MCF10A-Er-Src	breast:	n/a	n/a
10	SIN3AK20	chr6:27099415-27102067	HCT-116	colon:	n/a	n/a
11	CHD1	chr6:27099141-27102382	H1-hESC	embryonic stem cell:	n/a	n/a
12	NFIC	chr6:27099344-27101224	SK-N-SH	brain:	n/a	chr6:27099820-27099837 chr6:27099820-27099836
13	SMC3	chr6:27099990-27101932	GM12878	blood:	n/a	n/a
14	CEBPB	chr6:27099653-27102745	Hela-S3	cervix:	n/a	chr6:27102346-27102357
15	TAF7	chr6:27100284-27101918	H1-hESC	embryonic stem cell:	n/a	n/a
16	TCF12	chr6:27099094-27102549	A549	lung:	n/a	n/a
17	SMARCB1	chr6:27099251-27101942	Hela-S3	cervix:	n/a	n/a
18	USF1	chr6:27100409-27100804	SK-N-SH_RA	brain:	n/a	n/a
19	POLR2A	chr6:27099465-27101926	HepG2	liver:	n/a	n/a
20	POLR2A	chr6:27099422-27101795	SK-N-MC	brain:	n/a	n/a
21	POLR2A	chr6:27099960-27100678	HepG2	liver:	n/a	n/a
22	PBX3	chr6:27100258-27101075	A549	lung:	n/a	n/a
23	POLR2A	chr6:27099502-27101973	PFSK-1	brain:	n/a	n/a
24	RUNX3	chr6:27099111-27102037	GM12878	blood:	n/a	chr6:27100819-27100828
25	POLR2A	chr6:27099203-27101989	U87	brain:	n/a	n/a
26	MAX	chr6:27099445-27102587	A549	lung:	n/a	chr6:27100610-27100619
27	NR2C2	chr6:27099728-27101553	HepG2	liver:	n/a	n/a
28	POLR2A	chr6:27098864-27102290	GM19099	blood:	n/a	n/a
29	TBP	chr6:27100388-27101020	H1-hESC	embryonic stem cell:	n/a	n/a
30	NFIC	chr6:27099573-27101054	HepG2	liver:	n/a	chr6:27099820-27099837 chr6:27099820-27099836
31	POLR2A	chr6:27100195-27101159	HUVEC	blood vessel:	n/a	n/a
32	TCF7L2	chr6:27100376-27101028	PANC-1	pancreas:	n/a	n/a
33	YY1	chr6:27100319-27100975	SK-N-SH_RA	brain:	n/a	n/a
34	SP4	chr6:27099489-27102080	H1-hESC	embryonic stem cell:	n/a	chr6:27099774-27099785
35	MAX	chr6:27099601-27101372	K562	blood:	n/a	chr6:27100610-27100619
36	POLR2A	chr6:27099592-27102057	HepG2	liver:	n/a	n/a
37	EGR1	chr6:27099564-27100652	K562	blood:	n/a	n/a
38	GTF2B	chr6:27100301-27101102	K562	blood:	n/a	n/a
39	SETDB1	chr6:27099722-27101029	U2OS	brain:	n/a	n/a
40	BHLHE40	chr6:27100292-27102316	GM12878	blood:	n/a	n/a
41	ZBTB33	chr6:27100165-27101170	HCT-116	colon:	n/a	n/a
42	MAX	chr6:27098859-27101965	Hela-S3	cervix:	n/a	chr6:27100610-27100619
43	POLR2A	chr6:27098707-27102455	GM12878	blood:	n/a	n/a
44	SIN3A	chr6:27099465-27102013	GM12878	blood:	n/a	n/a
45	PML	chr6:27099393-27102534	K562	blood:	n/a	n/a
46	ZBTB33	chr6:27099998-27100629	GM12878	blood:	n/a	n/a
47	JUND	chr6:27099599-27101288	K562	blood:	n/a	chr6:27100646-27100655
48	POLR2A	chr6:27099312-27102055	MCF-7	breast:	n/a	n/a
49	POLR2A	chr6:27099098-27102095	HL-60	blood:	n/a	n/a
50	POLR2A	chr6:27098802-27102692	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:27100556-27100606	HRE	kidney:	n/a
2	chr6:27100556-27100606	GM12891	blood:	n/a
3	chr6:27100556-27100606	HRCEpiC	kidney:	n/a
4	chr6:27100556-27100606	IMR90	lung:	fetal
5	chr6:27100556-27100606	Hela-S3	cervix:	n/a
6	chr6:27100556-27100606	HCPEpiC	choroid plexus:	n/a
7	chr6:27100556-27100606	PrEC	prostate:	n/a
8	chr6:27100556-27100606	SK-N-SH_RA	brain:	n/a
9	chr6:27100556-27100606	Jurkat	blood:	n/a
10	chr6:27100556-27100606	HepG2	liver:	n/a
11	chr6:27100556-27100606	AG10803	skin:	n/a
12	chr6:27100556-27100606	AG04449	skin:	fetal
13	chr6:27100556-27100606	HMEC	breast:	n/a
14	chr6:27100556-27100606	HIPEpiC	eye:	n/a
15	chr6:27100556-27100606	GM12878	blood:	n/a
16	chr6:27100556-27100606	SAEC	small airway:	n/a
17	chr6:27100556-27100606	A549	lung:	n/a
18	chr6:27100556-27100606	SK-N-MC	brain:	n/a
19	chr6:27100556-27100606	ECC-1	luminal epithelium:	n/a
20	chr6:27100556-27100606	BJ	skin:	n/a
21	chr6:27100556-27100606	RPTEC	kidney:	n/a
22	chr6:27100556-27100606	GM19239	blood:	n/a
23	chr6:27100556-27100606	NB4	blood:	n/a
24	chr6:27100556-27100606	MCF-7	breast:	n/a
25	chr6:27100556-27100606	H1-hESC	embryonic stem cell:	embryo
26	chr6:27100556-27100606	NH-A	brain:	n/a
27	chr6:27100556-27100606	PANC-1	pancreas:	n/a
28	chr6:27100556-27100606	PFSK-1	brain:	n/a
29	chr6:27100556-27100606	HPAEpiC	pulmonary alveolar:	n/a
30	chr6:27100556-27100606	HCM	heart:	n/a
31	chr6:27100556-27100606	AG09309	skin:	n/a
32	chr6:27100556-27100606	CMK	blood:	n/a
33	chr6:27100556-27100606	NHDF-neo	bronchial:	n/a
34	chr6:27100556-27100606	ProgFib	skin:	n/a
35	chr6:27100556-27100606	MCF10A-Er-Src	breast:	n/a
36	chr6:27100556-27100606	T-47D	breast:	n/a
37	chr6:27100556-27100606	HRPEpiC	eye:	n/a
38	chr6:27100556-27100606	HCT-116	colon:	n/a
39	chr6:27100556-27100606	LNCaP	prostate:	n/a
40	chr6:27100556-27100606	AG09319	gingival:	n/a
41	chr6:27100556-27100606	HUVEC	blood vessel:	n/a
42	chr6:27100556-27100606	K562	blood:	n/a
43	chr6:27100556-27100606	AG04450	lung:	fetal
44	chr6:27100556-27100606	U87	brain:	n/a
45	chr6:27100556-27100606	HNPCEpiC	eye:	n/a
46	chr6:27100556-27100606	ovcar-3	ovarian:	n/a
47	chr6:27100556-27100606	HEK293	kidney:	embryo
48	chr6:27100556-27100606	GM06990	blood:	n/a
49	chr6:27100556-27100606	HEEpiC	esophagus:	n/a
50	chr6:27100556-27100606	NT2-D1	testis:	n/a

(count:117 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr6:26283553..26287733-chr6:27097522..27103890,12	K562	blood:
2	chr22:19466508..19469861-chr6:27098397..27102298,3	K562	blood:
3	chr6:26156157..26159561-chr6:27098059..27103137,9	MCF-7	breast:
4	chr6:27096288..27105112-chr6:27855525..27865082,32	K562	blood:
5	chr6:26187507..26190261-chr6:27099153..27102365,6	MCF-7	breast:
6	chr6:26214809..26219329-chr6:27098036..27102129,6	MCF-7	breast:
7	chr16:19078645..19079155-chr6:27100109..27100654,2	Hela-S3	cervix:
8	chr17:56707767..56709284-chr6:27100239..27101746,2	MCF-7	breast:
9	chr6:27094403..27106138-chr6:27772392..27783072,46	MCF-7	breast:
10	chr6:26210558..26220469-chr6:27093552..27103796,28	K562	blood:
11	chr6:27100385..27101245-chr6:27775487..27776359,3	Hela-S3	cervix:
12	chr6:27100578..27101684-chr6:27114629..27115627,5	Hela-S3	cervix:
13	chr3:64006479..64009154-chr6:27099911..27101593,2	MCF-7	breast:
14	chr6:26519250..26523737-chr6:27099178..27105777,8	K562	blood:
15	chr6:26233448..26235462-chr6:27099272..27101626,2	MCF-7	breast:
16	chr1:28832279..28832962-chr6:27100422..27101039,2	Hela-S3	cervix:
17	chr6:26155271..26161648-chr6:27095163..27104437,21	K562	blood:
18	chr12:46383844..46385059-chr6:27100517..27101410,4	Hela-S3	cervix:
19	chr6:26023233..26029617-chr6:27098032..27102736,8	MCF-7	breast:
20	chr6:26121882..26125935-chr6:27097712..27102367,10	MCF-7	breast:
21	chr3:135968947..135969500-chr6:27100458..27101422,2	HCT-116	colon:
22	chr5:43555615..43556531-chr6:27100554..27101250,2	Hela-S3	cervix:
23	chr11:62389082..62389744-chr6:27099706..27100681,2	Hela-S3	cervix:
24	chr6:26196890..26209578-chr6:27096615..27108451,46	K562	blood:
25	chr16:29817417..29818004-chr6:27100503..27101104,2	Hela-S3	cervix:
26	chr6:27094943..27118570-chr6:27854106..27868030,101	K562	blood:
27	chr6:27099529..27101818-chr6:27857109..27860986,3	MCF-7	breast:
28	chr3:170586359..170588667-chr6:27099127..27101405,2	K562	blood:
29	chr6:27100486..27101282-chr6:27860497..27861330,3	Hela-S3	cervix:
30	chr2:242625924..242626816-chr6:27100504..27101274,2	Hela-S3	cervix:
31	chr6:27098287..27101143-chr6:27833943..27835585,2	MCF-7	breast:
32	chr17:25620650..25621972-chr6:27100246..27101250,3	Hela-S3	cervix:
33	chr6:26986141..26989315-chr6:27099693..27102722,3	K562	blood:
34	chr6:27098287..27103463-chr6:27796109..27800380,7	K562	blood:
35	chr6:26248241..26251766-chr6:27097726..27103043,5	MCF-7	breast:
36	chr16:69373250..69373872-chr6:27099961..27100820,2	Hela-S3	cervix:
37	chr6:27098129..27102708-chr6:27857691..27863156,15	MCF-7	breast:
38	chr6:26231234..26236589-chr6:27099738..27104932,8	K562	blood:
39	chr6:26270978..26274693-chr6:27098356..27103484,7	MCF-7	breast:
40	chr6:26026115..26036040-chr6:27097153..27104835,26	K562	blood:
41	chr6:26187257..26192079-chr6:27098954..27103250,7	MCF-7	breast:
42	chr6:26024161..26035534-chr6:27093020..27104638,25	K562	blood:
43	chr13:103248662..103249433-chr6:27100334..27101111,2	Hela-S3	cervix:
44	chr6:26213328..26219374-chr6:27098401..27104203,12	MCF-7	breast:
45	chr6:27093465..27120217-chr6:27768366..27817187,256	K562	blood:
46	chr5:1633756..1634705-chr6:27100367..27101254,2	Hela-S3	cervix:
47	chr6:27098876..27101009-chr6:27528408..27531042,2	K562	blood:
48	chr6:27098188..27105257-chr6:27800590..27808222,20	K562	blood:
49	chr2:32388347..32391315-chr6:27100140..27102328,2	MCF-7	breast:
50	chr2:28113276..28113924-chr6:27100052..27100806,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
HIST1H2AG	TF binding region
HIST1H2BJ	TF binding region
HIST1H2BJ	CpG island
HIST1H2AG	CpG island
ENSG00000139218	Chromatin interaction
ENSG00000163584	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000215301	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000136986	Chromatin interaction
ENSG00000163636	Chromatin interaction
ENSG00000093009	Chromatin interaction
ENSG00000158019	Chromatin interaction
ENSG00000216331	Chromatin interaction
ENSG00000218281	Chromatin interaction
ENSG00000078487	Chromatin interaction
ENSG00000227543	Chromatin interaction
ENSG00000188825	Chromatin interaction
ENSG00000134900	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000196374	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000168242	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000063046	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000173456	Chromatin interaction
ENSG00000112812	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000124529	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000167325	Chromatin interaction
ENSG00000185686	Chromatin interaction
ENSG00000180198	Chromatin interaction
ENSG00000168393	Chromatin interaction
ENSG00000113369	Chromatin interaction
ENSG00000146834	Chromatin interaction
ENSG00000177954	Chromatin interaction
ENSG00000157456	Chromatin interaction
ENSG00000188002	Chromatin interaction
ENSG00000149541	Chromatin interaction
ENSG00000197238	Chromatin interaction
ENSG00000131979	Chromatin interaction
ENSG00000213380	Chromatin interaction
ENSG00000150753	Chromatin interaction
ENSG00000188987	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000256316	Chromatin interaction
ENSG00000197914	Chromatin interaction
ENSG00000156787	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000171174	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000176209	Chromatin interaction
ENSG00000154734	Chromatin interaction
ENSG00000184357	Chromatin interaction
ENSG00000076382	Chromatin interaction
ENSG00000182572	Chromatin interaction
ENSG00000198366	Chromatin interaction
ENSG00000099622	Chromatin interaction
ENSG00000199289	Chromatin interaction
ENSG00000164051	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000152683	Chromatin interaction
ENSG00000127947	Chromatin interaction
ENSG00000224843	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000163945	Chromatin interaction
ENSG00000109046	Chromatin interaction
ENSG00000137259	Chromatin interaction
ENSG00000114054	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000102796	Chromatin interaction
ENSG00000168575	Chromatin interaction
ENSG00000198518	Chromatin interaction
ENSG00000153487	Chromatin interaction
ENSG00000238610	Chromatin interaction
ENSG00000202408	Chromatin interaction
ENSG00000124575	Chromatin interaction
ENSG00000270103	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000082898	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000099968	Chromatin interaction
ENSG00000179262	Chromatin interaction
ENSG00000219738	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000070010	Chromatin interaction
ENSG00000197061	Chromatin interaction
ENSG00000217275	Chromatin interaction
ENSG00000256018	Chromatin interaction
ENSG00000132603	Chromatin interaction
ENSG00000106367	Chromatin interaction
ENSG00000228223	Chromatin interaction
ENSG00000124693	Chromatin interaction
ENSG00000146109	Chromatin interaction
ENSG00000187239	Chromatin interaction
ENSG00000167186	Chromatin interaction
ENSG00000150756	Chromatin interaction
ENSG00000115421	Chromatin interaction
ENSG00000263583	Chromatin interaction
ENSG00000232112	Chromatin interaction
ENSG00000158406	Chromatin interaction
ENSG00000182952	Chromatin interaction
ENSG00000242125	Chromatin interaction
ENSG00000261465	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000103495	Chromatin interaction
ENSG00000108106	Chromatin interaction
ENSG00000238621	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000196176	Chromatin interaction
ENSG00000119335	Chromatin interaction
ENSG00000172239	Chromatin interaction
ENSG00000182611	Chromatin interaction
ENSG00000272716	Chromatin interaction
ENSG00000196712	Chromatin interaction
ENSG00000175567	Chromatin interaction
ENSG00000152601	Chromatin interaction
ENSG00000218690	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10484392	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10484394	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1102566	1.00[AMR][1000 genomes]
rs1102568	1.00[AMR][1000 genomes]
rs11753245	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11753378	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11753580	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11755519	1.00[AMR][1000 genomes]
rs11755651	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11755813	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11756304	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11757963	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11759167	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11759771	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894241	1.00[AMR][1000 genomes]
rs16894520	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16895602	1.00[AMR][1000 genomes]
rs16897417	1.00[AMR][1000 genomes]
rs2021278	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2022271	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2092113	1.00[AMR][1000 genomes]
rs55656206	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55867104	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55925824	1.00[AMR][1000 genomes]
rs56141916	1.00[AMR][1000 genomes]
rs56156722	1.00[AMR][1000 genomes]
rs57603020	1.00[AMR][1000 genomes]
rs58130043	1.00[AMR][1000 genomes]
rs58265076	1.00[AMR][1000 genomes]
rs58900251	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58977511	1.00[AMR][1000 genomes]
rs59757260	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60259667	1.00[AMR][1000 genomes]
rs61185098	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61392315	1.00[AMR][1000 genomes]
rs73737997	1.00[AMR][1000 genomes]
rs73737999	1.00[AMR][1000 genomes]
rs73738226	1.00[AMR][1000 genomes]
rs73738236	1.00[AMR][1000 genomes]
rs73738237	1.00[AMR][1000 genomes]
rs73738707	1.00[AMR][1000 genomes]
rs73738713	1.00[AMR][1000 genomes]
rs73738717	1.00[AMR][1000 genomes]
rs73738718	1.00[AMR][1000 genomes]
rs73738731	1.00[AMR][1000 genomes]
rs73738732	1.00[AMR][1000 genomes]
rs73738733	1.00[AMR][1000 genomes]
rs73738734	1.00[AMR][1000 genomes]
rs73738738	1.00[AMR][1000 genomes]
rs73738739	1.00[AMR][1000 genomes]
rs73738741	1.00[AMR][1000 genomes]
rs73738749	1.00[AMR][1000 genomes]
rs73739510	1.00[AMR][1000 genomes]
rs73739515	1.00[AMR][1000 genomes]
rs73739517	1.00[AMR][1000 genomes]
rs73739519	1.00[AMR][1000 genomes]
rs73739521	1.00[AMR][1000 genomes]
rs73739522	1.00[AMR][1000 genomes]
rs73739531	1.00[AMR][1000 genomes]
rs73739534	1.00[AMR][1000 genomes]
rs73739545	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739557	1.00[AMR][1000 genomes]
rs73739578	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739581	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739582	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739586	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739587	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739589	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739591	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739594	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739598	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739600	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740278	1.00[AMR][1000 genomes]
rs73740404	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740405	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740406	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740409	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740414	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740432	1.00[AMR][1000 genomes]
rs7449898	1.00[AMR][1000 genomes]
rs7755679	1.00[AMR][1000 genomes]
rs858966	1.00[AMR][1000 genomes]
rs858971	1.00[AMR][1000 genomes]
rs9366681	1.00[AMR][1000 genomes]
rs996246	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1029124	chr6:26825468-27109774	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	244 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27098000-27102200	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr6:27098200-27101800	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr6:27098400-27100600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:27098400-27101600	Active TSS	GM12878-XiMat	blood
5	chr6:27098400-27102400	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr6:27098400-27102400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:27098400-27102800	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr6:27098600-27101000	Active TSS	HMEC	breast
9	chr6:27098600-27102000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:27098600-27102200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:27098600-27102400	Active TSS	H1 Cell Line	embryonic stem cell
12	chr6:27098600-27102400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:27098800-27101600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:27098800-27101800	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr6:27098800-27101800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:27098800-27102000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:27098800-27102000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:27098800-27102200	Active TSS	Brain Germinal Matrix	brain
19	chr6:27098800-27102400	Active TSS	H9 Cell Line	embryonic stem cell
20	chr6:27098800-27102400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:27098800-27102400	Active TSS	Fetal Kidney	kidney
22	chr6:27098800-27102400	Active TSS	NHLF	lung
23	chr6:27098800-27102800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:27098800-27102800	Active TSS	A549	lung
25	chr6:27098800-27104600	Active TSS	K562	blood
26	chr6:27099000-27100800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:27099000-27100800	Active TSS	Colonic Mucosa	Colon
28	chr6:27099000-27100800	Active TSS	Rectal Mucosa Donor 29	rectum
29	chr6:27099000-27101000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:27099000-27101000	Active TSS	Muscle Satellite Cultured Cells	--
31	chr6:27099000-27101200	Active TSS	Fetal Brain Male	brain
32	chr6:27099000-27101400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:27099000-27101600	Active TSS	Brain Inferior Temporal Lobe	brain
34	chr6:27099000-27101600	Active TSS	Fetal Intestine Large	intestine
35	chr6:27099000-27101600	Active TSS	Psoas Muscle	Psoas
36	chr6:27099000-27101600	Active TSS	HSMMtube	muscle
37	chr6:27099000-27101800	Active TSS	HUES64 Cell Line	embryonic stem cell
38	chr6:27099000-27101800	Active TSS	iPS-18 Cell Line	embryonic stem cell
39	chr6:27099000-27102000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:27099000-27102000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr6:27099000-27102000	Active TSS	Right Ventricle	heart
42	chr6:27099000-27102200	Active TSS	NHDF-Ad	bronchial
43	chr6:27099000-27102400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
44	chr6:27099000-27102400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:27099000-27102400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr6:27099200-27100600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:27099200-27100800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr6:27099200-27100800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
49	chr6:27099200-27100800	Active TSS	Pancreas	Pancrea
50	chr6:27099200-27101000	Active TSS	Primary hematopoietic stem cells	blood

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