Variant report

Variant	rs16895058
Chromosome Location	chr6:29521125-29521126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29520442..29521980-chr6:29599358..29601313,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204681	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16894986	0.91[ASN][1000 genomes]
rs16894996	0.93[ASN][1000 genomes]
rs16895022	0.96[ASN][1000 genomes]
rs16895053	1.00[ASN][1000 genomes]
rs17177979	1.00[ASN][1000 genomes]
rs17183932	0.83[ASN][1000 genomes]
rs29243	1.00[ASN][1000 genomes]
rs3025650	1.00[ASN][1000 genomes]
rs3025673	0.96[ASN][1000 genomes]
rs362535	1.00[ASN][1000 genomes]
rs60213092	0.83[ASN][1000 genomes]
rs61730668	0.91[ASN][1000 genomes]
rs72507814	1.00[ASN][1000 genomes]
rs73747309	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29520400-29521400	Bivalent Enhancer	Fetal Heart	heart
2	chr6:29520400-29522000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
3	chr6:29520600-29521200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
4	chr6:29520600-29521200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
5	chr6:29520600-29521200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
6	chr6:29520600-29521200	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:29520600-29521200	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
8	chr6:29520600-29521200	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr6:29520600-29521200	Bivalent Enhancer	Liver	Liver
10	chr6:29520600-29521400	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:29520600-29521400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
12	chr6:29520600-29521400	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr6:29520600-29521400	Flanking Bivalent TSS/Enh	Fetal Lung	lung
14	chr6:29520600-29521600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:29520600-29521600	Flanking Bivalent TSS/Enh	Primary T killer naive cells fromperipheralblood	blood
16	chr6:29520600-29521600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:29520600-29521600	Active TSS	Brain Angular Gyrus	brain
18	chr6:29520600-29521600	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
19	chr6:29520600-29521600	Active TSS	Rectal Smooth Muscle	rectum
20	chr6:29520600-29521800	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
21	chr6:29520600-29521800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:29520600-29521800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
23	chr6:29520600-29521800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
24	chr6:29520600-29521800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
25	chr6:29520600-29521800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
26	chr6:29520600-29521800	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
27	chr6:29520600-29522000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:29520600-29522000	Bivalent Enhancer	Stomach Mucosa	stomach
29	chr6:29520600-29522000	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
30	chr6:29520600-29522200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
31	chr6:29520600-29522200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
32	chr6:29520600-29522200	Bivalent Enhancer	Fetal Stomach	stomach
33	chr6:29520600-29522200	Bivalent Enhancer	Fetal Thymus	thymus
34	chr6:29520800-29521200	Bivalent/Poised TSS	Primary neutrophils fromperipheralblood	blood
35	chr6:29520800-29521200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:29520800-29521200	Flanking Bivalent TSS/Enh	Primary T killer memory cells from peripheral blood	blood
37	chr6:29520800-29521400	Flanking Active TSS	Primary hematopoietic stem cells	blood
38	chr6:29520800-29521400	Active TSS	Primary T helper naive cells from peripheral blood	blood
39	chr6:29520800-29521400	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
40	chr6:29520800-29521400	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
41	chr6:29520800-29521800	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
42	chr6:29520800-29521800	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
43	chr6:29520800-29521800	Bivalent Enhancer	Fetal Brain Male	brain
44	chr6:29520800-29521800	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
45	chr6:29520800-29521800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
46	chr6:29520800-29522000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
47	chr6:29520800-29522000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
48	chr6:29520800-29522000	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
49	chr6:29521000-29521200	Flanking Bivalent TSS/Enh	ES-WA7 Cell Line	embryonic stem cell
50	chr6:29521000-29521200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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