Variant report

Variant	rs362535
Chromosome Location	chr6:29527621-29527622
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16894986	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16894996	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16895022	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16895053	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16895058	1.00[ASN][1000 genomes]
rs17177979	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29243	1.00[ASN][1000 genomes]
rs3025650	1.00[ASN][1000 genomes]
rs3025673	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60213092	0.83[ASN][1000 genomes]
rs61730668	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72507814	1.00[ASN][1000 genomes]
rs73747309	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv5239	chr6:29527407-29566446	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29525200-29528000	Active TSS	GM12878-XiMat	blood
2	chr6:29526200-29528200	Enhancers	H9 Cell Line	embryonic stem cell
3	chr6:29527000-29527800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:29527000-29527800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
5	chr6:29527200-29527800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr6:29527200-29527800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:29527200-29528000	Flanking Active TSS	HepG2	liver
8	chr6:29527200-29528200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
9	chr6:29527400-29527800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:29527400-29528200	Flanking Active TSS	Liver	Liver
11	chr6:29527400-29528200	Enhancers	Stomach Mucosa	stomach
12	chr6:29527600-29527800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr6:29527600-29528000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:29527600-29528000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
15	chr6:29527600-29528000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
16	chr6:29527600-29528000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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