Variant report

Variant	rs61730668
Chromosome Location	chr6:29455465-29455466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16894986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894996	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16895022	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16895053	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16895058	0.91[ASN][1000 genomes]
rs17177979	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17183932	0.91[ASN][1000 genomes]
rs29243	0.91[ASN][1000 genomes]
rs3025650	0.91[ASN][1000 genomes]
rs3025673	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs362535	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60213092	0.91[ASN][1000 genomes]
rs72507814	0.91[ASN][1000 genomes]
rs73747309	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv883528	chr6:29447724-29494897	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29452200-29457000	Weak transcription	Liver	Liver
2	chr6:29454000-29455600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:29454400-29456000	Enhancers	K562	blood
4	chr6:29454800-29457800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:29455000-29457200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:29455400-29457200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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