Variant report
| Variant | rs72507814 |
|---|---|
| Chromosome Location | chr6:29541566-29541567 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:29540015..29541608-chr6:29548921..29550821,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000201330 | Chromatin interaction |
| ENSG00000231301 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs16894986 | 0.91[ASN][1000 genomes] |
| rs16894996 | 0.93[ASN][1000 genomes] |
| rs16895022 | 0.96[ASN][1000 genomes] |
| rs16895053 | 1.00[ASN][1000 genomes] |
| rs16895058 | 1.00[ASN][1000 genomes] |
| rs17177979 | 1.00[ASN][1000 genomes] |
| rs29243 | 1.00[ASN][1000 genomes] |
| rs3025650 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3025673 | 0.96[ASN][1000 genomes] |
| rs362535 | 1.00[ASN][1000 genomes] |
| rs60213092 | 0.83[ASN][1000 genomes] |
| rs61730668 | 0.91[ASN][1000 genomes] |
| rs73747309 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758039 | chr6:29469101-29672665 | Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 2 | esv2759411 | chr6:29469101-29672665 | Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 3 | nsv5239 | chr6:29527407-29566446 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 4 | nsv969372 | chr6:29541332-29542549 | ZNF genes & repeats Bivalent Enhancer Weak transcription | TF binding regionChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:29541200-29553200 | Weak transcription | H9 Cell Line | embryonic stem cell |
