Variant report
| Variant | rs16895022 |
|---|---|
| Chromosome Location | chr6:29501220-29501221 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:4)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:29498758..29502303-chr6:29502366..29506492,4 | K562 | blood: |
(count:4 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-OR2H2-2 | chr6:29498829-29501345 | ENSG00000224582.1 |
| 2 | lnc-OR2H2-2 | chr6:29498829-29501345 | NONHSAT108525 |
| 3 | lnc-OR2H2-2 | chr6:29498829-29501345 | NONHSAT108526 |
| 4 | lnc-OR2H2-2 | chr6:29499857-29501345 | NONHSAT108527 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs1419644 | 0.81[ASN][1000 genomes] |
| rs16894986 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs16894996 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs16895053 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs16895058 | 0.96[ASN][1000 genomes] |
| rs17177979 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17183932 | 0.87[ASN][1000 genomes] |
| rs29243 | 0.96[ASN][1000 genomes] |
| rs3025650 | 0.96[ASN][1000 genomes] |
| rs3025673 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs362535 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs60213092 | 0.87[ASN][1000 genomes] |
| rs61730668 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72507814 | 0.96[ASN][1000 genomes] |
| rs73747309 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3424039 | chr6:29439297-29504564 | Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | esv2758039 | chr6:29469101-29672665 | Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 3 | esv2759411 | chr6:29469101-29672665 | Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 4 | nsv10807 | chr6:29498328-29501339 | Weak transcription Enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:29497000-29515000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
