Variant report

Variant	rs16907602
Chromosome Location	chr9:94325001-94325002
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10512214	1.00[AMR][1000 genomes]
rs11998997	1.00[AMR][1000 genomes]
rs12001172	1.00[AMR][1000 genomes]
rs12001678	1.00[AMR][1000 genomes]
rs12001758	1.00[AMR][1000 genomes]
rs12003741	1.00[AMR][1000 genomes]
rs16907588	1.00[AMR][1000 genomes]
rs35764413	1.00[AMR][1000 genomes]
rs4381076	1.00[AMR][1000 genomes]
rs56091954	1.00[AMR][1000 genomes]
rs56227711	1.00[AMR][1000 genomes]
rs57006470	1.00[AMR][1000 genomes]
rs57412003	1.00[AMR][1000 genomes]
rs59365117	1.00[AMR][1000 genomes]
rs60009660	1.00[AMR][1000 genomes]
rs60217100	1.00[AMR][1000 genomes]
rs60341050	1.00[AMR][1000 genomes]
rs61094317	1.00[AMR][1000 genomes]
rs6479372	1.00[AMR][1000 genomes]
rs6479373	1.00[AMR][1000 genomes]
rs7026091	1.00[AMR][1000 genomes]
rs73494674	1.00[AMR][1000 genomes]
rs73496706	1.00[AMR][1000 genomes]
rs73496717	1.00[AMR][1000 genomes]
rs73496726	1.00[AMR][1000 genomes]
rs73496729	1.00[AMR][1000 genomes]
rs73496737	1.00[AMR][1000 genomes]
rs73496741	1.00[AMR][1000 genomes]
rs73496743	1.00[AMR][1000 genomes]
rs73513020	1.00[AMR][1000 genomes]
rs73513032	1.00[AMR][1000 genomes]
rs73513043	1.00[AMR][1000 genomes]
rs73513061	1.00[AMR][1000 genomes]
rs73513068	1.00[AMR][1000 genomes]
rs73515039	1.00[AMR][1000 genomes]
rs73521420	1.00[AMR][1000 genomes]
rs73521430	1.00[AMR][1000 genomes]
rs7873653	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332537	chr9:94298446-94327291	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94320400-94333800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr9:94321400-94326000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr9:94323000-94326000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:94323000-94326200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:94323000-94326200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:94324400-94326000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:94324600-94325200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:94324600-94325400	Enhancers	Fetal Lung	lung
9	chr9:94324800-94325200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr9:94324800-94325200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr9:94324800-94325200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:94324800-94326400	Enhancers	Brain Germinal Matrix	brain
13	chr9:94325000-94326000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr9:94325000-94326000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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