Variant report
| Variant | rs60009660 |
|---|---|
| Chromosome Location | chr9:94407113-94407114 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs10512214 | 1.00[AMR][1000 genomes] |
| rs11998997 | 1.00[AMR][1000 genomes] |
| rs12001172 | 1.00[AMR][1000 genomes] |
| rs12001678 | 1.00[AMR][1000 genomes] |
| rs12001758 | 1.00[AMR][1000 genomes] |
| rs12003706 | 1.00[AMR][1000 genomes] |
| rs12003741 | 1.00[AMR][1000 genomes] |
| rs12685556 | 1.00[AMR][1000 genomes] |
| rs16907588 | 1.00[AMR][1000 genomes] |
| rs16907602 | 1.00[AMR][1000 genomes] |
| rs35764413 | 1.00[AMR][1000 genomes] |
| rs4381076 | 1.00[AMR][1000 genomes] |
| rs56091954 | 1.00[AMR][1000 genomes] |
| rs56227711 | 1.00[AMR][1000 genomes] |
| rs57006470 | 1.00[AMR][1000 genomes] |
| rs59365117 | 1.00[AMR][1000 genomes] |
| rs60217100 | 1.00[AMR][1000 genomes] |
| rs60341050 | 1.00[AMR][1000 genomes] |
| rs61094317 | 1.00[AMR][1000 genomes] |
| rs6479372 | 1.00[AMR][1000 genomes] |
| rs6479373 | 1.00[AMR][1000 genomes] |
| rs73494674 | 1.00[AMR][1000 genomes] |
| rs73496706 | 1.00[AMR][1000 genomes] |
| rs73496717 | 1.00[AMR][1000 genomes] |
| rs73496726 | 1.00[AMR][1000 genomes] |
| rs73496729 | 1.00[AMR][1000 genomes] |
| rs73496737 | 1.00[AMR][1000 genomes] |
| rs73496741 | 1.00[AMR][1000 genomes] |
| rs73496743 | 1.00[AMR][1000 genomes] |
| rs73513020 | 1.00[AMR][1000 genomes] |
| rs73513032 | 1.00[AMR][1000 genomes] |
| rs73513043 | 1.00[AMR][1000 genomes] |
| rs73513061 | 1.00[AMR][1000 genomes] |
| rs73513068 | 1.00[AMR][1000 genomes] |
| rs73515039 | 1.00[AMR][1000 genomes] |
| rs73521420 | 1.00[AMR][1000 genomes] |
| rs73521430 | 1.00[AMR][1000 genomes] |
| rs7863502 | 1.00[AMR][1000 genomes] |
| rs7873653 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1045332 | chr9:94352661-94656016 | Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1047426 | chr9:94363211-94758114 | Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv531631 | chr9:94373847-94633213 | Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:94406800-94407400 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
