Variant report
| Variant | rs57006470 |
|---|---|
| Chromosome Location | chr9:94314798-94314799 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:94314127..94316107-chr9:94326868..94329032,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10512214 | 1.00[AMR][1000 genomes] |
| rs11998997 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12001758 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12003741 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16907588 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16907602 | 1.00[AMR][1000 genomes] |
| rs35764413 | 1.00[AMR][1000 genomes] |
| rs4381076 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56091954 | 1.00[AMR][1000 genomes] |
| rs57412003 | 1.00[AMR][1000 genomes] |
| rs59365117 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60009660 | 1.00[AMR][1000 genomes] |
| rs60341050 | 1.00[AMR][1000 genomes] |
| rs61094317 | 1.00[AMR][1000 genomes] |
| rs7026091 | 1.00[AMR][1000 genomes] |
| rs73494674 | 1.00[AMR][1000 genomes] |
| rs73496706 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73496717 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73496726 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73496729 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73496737 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73496741 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73496743 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73513020 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73513032 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73513043 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73513061 | 1.00[AMR][1000 genomes] |
| rs73513068 | 1.00[AMR][1000 genomes] |
| rs73515039 | 1.00[AMR][1000 genomes] |
| rs73521420 | 1.00[AMR][1000 genomes] |
| rs73521430 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3332537 | chr9:94298446-94327291 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:94309600-94315600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
