Variant report

Variant	rs73521420
Chromosome Location	chr9:94448671-94448672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10512214	1.00[AMR][1000 genomes]
rs11998997	1.00[AMR][1000 genomes]
rs12001172	1.00[AMR][1000 genomes]
rs12001678	1.00[AMR][1000 genomes]
rs12001758	1.00[AMR][1000 genomes]
rs12003706	1.00[AMR][1000 genomes]
rs12003741	1.00[AMR][1000 genomes]
rs12685556	1.00[AMR][1000 genomes]
rs16907588	1.00[AMR][1000 genomes]
rs16907602	1.00[AMR][1000 genomes]
rs35764413	1.00[AMR][1000 genomes]
rs4381076	1.00[AMR][1000 genomes]
rs56091954	1.00[AMR][1000 genomes]
rs56227711	1.00[AMR][1000 genomes]
rs57006470	1.00[AMR][1000 genomes]
rs59365117	1.00[AMR][1000 genomes]
rs60009660	1.00[AMR][1000 genomes]
rs60217100	1.00[AMR][1000 genomes]
rs60341050	1.00[AMR][1000 genomes]
rs61094317	1.00[AMR][1000 genomes]
rs6479372	1.00[AMR][1000 genomes]
rs6479373	1.00[AMR][1000 genomes]
rs73494674	1.00[AMR][1000 genomes]
rs73496706	1.00[AMR][1000 genomes]
rs73496717	1.00[AMR][1000 genomes]
rs73496726	1.00[AMR][1000 genomes]
rs73496729	1.00[AMR][1000 genomes]
rs73496737	1.00[AMR][1000 genomes]
rs73496741	1.00[AMR][1000 genomes]
rs73496743	1.00[AMR][1000 genomes]
rs73513020	1.00[AMR][1000 genomes]
rs73513032	1.00[AMR][1000 genomes]
rs73513043	1.00[AMR][1000 genomes]
rs73513061	1.00[AMR][1000 genomes]
rs73513068	1.00[AMR][1000 genomes]
rs73515039	1.00[AMR][1000 genomes]
rs73521430	1.00[AMR][1000 genomes]
rs7863502	1.00[AMR][1000 genomes]
rs7873653	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94438800-94451000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:94440600-94455200	Weak transcription	Fetal Heart	heart
3	chr9:94443600-94452400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr9:94444200-94453000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:94444200-94453200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr9:94444200-94461400	Weak transcription	Right Atrium	heart
7	chr9:94444600-94449000	Weak transcription	Fetal Brain Male	brain
8	chr9:94445400-94455800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:94445600-94451000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:94445600-94451400	Weak transcription	Osteobl	bone
11	chr9:94445600-94456000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:94448600-94449000	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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