Variant report

Variant	rs16907791
Chromosome Location	chr11:10437501-10437502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10433858..10436750-chr11:10437236..10438791,2	MCF-7	breast:
2	chr11:10436479..10438481-chr11:10470802..10472872,2	K562	blood:

Variant related genes	Relation type
ENSG00000133805	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11042690	1.00[EUR][1000 genomes]
rs11042693	1.00[EUR][1000 genomes]
rs12274419	1.00[EUR][1000 genomes]
rs12290428	1.00[EUR][1000 genomes]
rs12291905	1.00[EUR][1000 genomes]
rs12293205	1.00[EUR][1000 genomes]
rs1372813	1.00[EUR][1000 genomes]
rs16907823	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16907914	1.00[EUR][1000 genomes]
rs6484281	1.00[EUR][1000 genomes]
rs7102053	1.00[EUR][1000 genomes]
rs7936457	0.88[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7942864	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9666188	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10430000-10441000	Weak transcription	Right Atrium	heart
2	chr11:10432800-10438000	Weak transcription	Psoas Muscle	Psoas
3	chr11:10434400-10438400	Enhancers	Primary hematopoietic stem cells	blood
4	chr11:10434600-10437800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:10434600-10438400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:10434800-10437600	Enhancers	Adipose Nuclei	Adipose
7	chr11:10435400-10437600	Enhancers	Duodenum Mucosa	Duodenum
8	chr11:10435400-10437600	Enhancers	Fetal Muscle Leg	muscle
9	chr11:10435400-10438400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr11:10436000-10438800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr11:10436200-10437600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:10436400-10437800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:10436600-10439400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:10436600-10439600	Weak transcription	Osteobl	bone
15	chr11:10436600-10439800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:10436800-10437600	Enhancers	NHEK	skin
17	chr11:10436800-10439000	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr11:10436800-10439800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:10437000-10437600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr11:10437000-10438400	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr11:10437000-10438600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:10437200-10437600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:10437200-10438400	Weak transcription	Spleen	Spleen
24	chr11:10437200-10438800	Weak transcription	NHDF-Ad	bronchial
25	chr11:10437400-10437600	Enhancers	Placenta	Placenta
26	chr11:10437400-10439200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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