Variant report

Variant	rs7942864
Chromosome Location	chr11:10458512-10458513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11042690	1.00[EUR][1000 genomes]
rs11042693	1.00[EUR][1000 genomes]
rs12274419	1.00[EUR][1000 genomes]
rs12290428	1.00[EUR][1000 genomes]
rs12291905	1.00[EUR][1000 genomes]
rs12293205	1.00[EUR][1000 genomes]
rs16907791	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16907823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16907914	1.00[EUR][1000 genomes]
rs6484281	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102053	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7936457	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9666188	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10448600-10460000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:10457200-10459000	Enhancers	Primary hematopoietic stem cells	blood
3	chr11:10457200-10459200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:10457200-10459600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:10457200-10460200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:10457400-10458600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:10457600-10471800	Weak transcription	NHDF-Ad	bronchial
8	chr11:10458000-10459000	Enhancers	Primary B cells from cord blood	blood
9	chr11:10458200-10458800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:10458200-10461400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr11:10458400-10458800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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