Variant report

Variant	rs11042693
Chromosome Location	chr11:10280797-10280798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11042619	0.84[YRI][hapmap]
rs11042631	0.85[YRI][hapmap]
rs11042649	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042660	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042690	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042698	0.83[YRI][hapmap]
rs11042707	0.84[YRI][hapmap]
rs11042708	0.85[YRI][hapmap]
rs12272934	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12274419	1.00[EUR][1000 genomes]
rs12290428	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291905	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12293205	1.00[EUR][1000 genomes]
rs12293889	0.90[AFR][1000 genomes]
rs13377375	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1372813	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16907586	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16907791	1.00[EUR][1000 genomes]
rs16907823	1.00[EUR][1000 genomes]
rs5005	0.85[YRI][hapmap]
rs59084464	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6484281	1.00[EUR][1000 genomes]
rs7102053	1.00[EUR][1000 genomes]
rs7936457	1.00[EUR][1000 genomes]
rs7942864	1.00[EUR][1000 genomes]
rs9666188	1.00[EUR][1000 genomes]
rs9988844	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10264600-10280800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10264800-10282800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:10268600-10300000	Weak transcription	Fetal Intestine Small	intestine
4	chr11:10269800-10283000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:10273800-10280800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:10277400-10281200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr11:10277600-10280800	Weak transcription	NHLF	lung
8	chr11:10277600-10283000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:10277600-10283000	Weak transcription	HUVEC	blood vessel
10	chr11:10277600-10292000	Weak transcription	Aorta	Aorta
11	chr11:10278000-10282800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr11:10278000-10283200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:10278200-10283000	Weak transcription	HSMM	muscle
14	chr11:10278200-10295200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:10278200-10309200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:10278800-10283000	Weak transcription	Osteobl	bone
17	chr11:10279000-10283000	Weak transcription	NHDF-Ad	bronchial
18	chr11:10279000-10283400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:10279000-10311400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:10279400-10296600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:10279600-10280800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:10279800-10280800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:10279800-10282800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:10279800-10287800	Weak transcription	Left Ventricle	heart
25	chr11:10280000-10281200	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr11:10280200-10280800	Enhancers	HepG2	liver
27	chr11:10280200-10281000	Enhancers	A549	lung
28	chr11:10280400-10281000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:10280400-10281000	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr11:10280400-10281000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:10280400-10281200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:10280600-10280800	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr11:10280600-10281000	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr11:10280600-10287200	Weak transcription	Ovary	ovary

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