Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11042587	0.91[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11042597	0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs11042600	1.00[EUR][1000 genomes]
rs11042619	0.83[YRI][hapmap]
rs11042631	0.84[YRI][hapmap]
rs11042660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042690	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042693	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042698	0.82[YRI][hapmap]
rs11042707	0.83[YRI][hapmap]
rs11042708	0.82[YRI][hapmap]
rs12270596	1.00[EUR][1000 genomes]
rs12272934	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12274419	1.00[EUR][1000 genomes]
rs12277094	0.80[AFR][1000 genomes]
rs12290428	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12293205	1.00[EUR][1000 genomes]
rs12293889	0.87[AFR][1000 genomes]
rs13377375	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1372813	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16907586	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5005	0.84[YRI][hapmap]
rs56656104	1.00[EUR][1000 genomes]
rs58442208	1.00[EUR][1000 genomes]
rs59084464	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9988844	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv975150	chr11:10174580-10182242	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10170600-10189000	Weak transcription	Left Ventricle	heart
2	chr11:10176200-10184000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:10177800-10183200	Weak transcription	Ovary	ovary
4	chr11:10177800-10183800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:10178000-10182200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:10178000-10182200	Weak transcription	HMEC	breast
7	chr11:10178000-10183600	Weak transcription	Right Ventricle	heart
8	chr11:10178200-10180400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:10178200-10180400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:10178200-10182200	Weak transcription	NHLF	lung
11	chr11:10178200-10182400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:10178200-10185400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:10178200-10213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:10179800-10181200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr11:10180000-10180600	Enhancers	Osteobl	bone
16	chr11:10180000-10181000	Enhancers	Hela-S3	cervix

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