Variant report

Variant	rs13377375
Chromosome Location	chr11:10207666-10207667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11042587	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11042597	1.00[EUR][1000 genomes]
rs11042600	1.00[EUR][1000 genomes]
rs11042649	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042660	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042690	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042693	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12272934	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12274419	1.00[EUR][1000 genomes]
rs12277094	0.82[AFR][1000 genomes]
rs12290428	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12293205	1.00[EUR][1000 genomes]
rs12293889	0.90[AFR][1000 genomes]
rs1372813	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16907586	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56656104	1.00[EUR][1000 genomes]
rs59084464	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9988844	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10178200-10213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10184600-10211400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:10186200-10209200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:10188000-10222800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:10202400-10216000	Weak transcription	Fetal Intestine Small	intestine
6	chr11:10203400-10208600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:10203600-10215600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:10203600-10220000	Weak transcription	NH-A	brain
9	chr11:10203800-10223800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:10204400-10208800	Weak transcription	Ovary	ovary
11	chr11:10204400-10217200	Weak transcription	Fetal Intestine Large	intestine
12	chr11:10204600-10211000	Weak transcription	Fetal Heart	heart
13	chr11:10204600-10217000	Weak transcription	Placenta	Placenta
14	chr11:10205400-10214200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:10205600-10212400	Weak transcription	NHDF-Ad	bronchial
16	chr11:10205600-10217000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:10205800-10220600	Weak transcription	A549	lung
18	chr11:10206200-10208800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:10206200-10216600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr11:10207400-10209400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:10207400-10216200	Weak transcription	Adipose Nuclei	Adipose
22	chr11:10207400-10216600	Weak transcription	Fetal Lung	lung
23	chr11:10207600-10207800	Weak transcription	Aorta	Aorta
24	chr11:10207600-10208600	Enhancers	Pancreatic Islets	Pancreatic Islet

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