Variant report

Variant	rs9988844
Chromosome Location	chr11:10125933-10125934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11042544	1.00[EUR][1000 genomes]
rs11042546	1.00[EUR][1000 genomes]
rs11042551	1.00[EUR][1000 genomes]
rs11042587	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11042597	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042600	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042649	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11042660	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11042690	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11042693	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12270444	1.00[EUR][1000 genomes]
rs12270596	1.00[EUR][1000 genomes]
rs12272934	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12277094	0.82[AFR][1000 genomes]
rs12290428	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12291905	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12293889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377319	1.00[EUR][1000 genomes]
rs13377375	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1372813	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16907586	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56656104	1.00[EUR][1000 genomes]
rs58442208	1.00[EUR][1000 genomes]
rs59084464	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10116800-10131000	Weak transcription	Gastric	stomach
2	chr11:10117200-10131000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:10120400-10142800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:10120600-10129200	Weak transcription	Psoas Muscle	Psoas
5	chr11:10120800-10131000	Weak transcription	A549	lung
6	chr11:10121000-10129800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:10121200-10130400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:10121400-10126000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:10121400-10131200	Weak transcription	Liver	Liver
10	chr11:10122200-10127200	Weak transcription	Right Atrium	heart
11	chr11:10122200-10129000	Weak transcription	Adipose Nuclei	Adipose
12	chr11:10122200-10129000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:10122200-10130800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:10122200-10131000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:10122200-10144200	Weak transcription	Left Ventricle	heart
16	chr11:10122200-10156400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:10122400-10126000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:10122400-10126000	Weak transcription	Lung	lung
19	chr11:10122400-10127800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr11:10122400-10129200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:10122400-10130800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:10122400-10130800	Weak transcription	Fetal Lung	lung
23	chr11:10122400-10130800	Weak transcription	HSMM	muscle
24	chr11:10122400-10131200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:10122400-10138600	Weak transcription	Esophagus	oesophagus
26	chr11:10122600-10130400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:10122600-10130800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr11:10122800-10129000	Weak transcription	NHLF	lung
29	chr11:10122800-10130400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:10122800-10130400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr11:10122800-10131000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr11:10122800-10132800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:10122800-10141200	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr11:10122800-10142600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:10123000-10126400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:10123000-10130200	Weak transcription	Fetal Muscle Leg	muscle
37	chr11:10123000-10130400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:10123200-10156400	Weak transcription	Fetal Intestine Small	intestine
39	chr11:10124800-10128000	Weak transcription	NHDF-Ad	bronchial
40	chr11:10125000-10126000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr11:10125400-10126200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:10125400-10126200	Enhancers	Right Ventricle	heart
43	chr11:10125600-10126000	Weak transcription	Ovary	ovary
44	chr11:10125800-10126000	Active TSS	Aorta	Aorta
45	chr11:10125800-10126000	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr11:10125800-10126200	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links