Variant report

Variant	rs12272934
Chromosome Location	chr11:10222938-10222939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11042587	0.91[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11042597	0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs11042600	1.00[EUR][1000 genomes]
rs11042619	0.84[YRI][hapmap]
rs11042631	0.85[YRI][hapmap]
rs11042649	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042690	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042693	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042698	0.83[YRI][hapmap]
rs11042707	0.84[YRI][hapmap]
rs11042708	0.85[YRI][hapmap]
rs12274419	1.00[EUR][1000 genomes]
rs12277094	0.80[AFR][1000 genomes]
rs12290428	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12293205	1.00[EUR][1000 genomes]
rs12293889	0.87[AFR][1000 genomes]
rs13377375	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1372813	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16907586	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5005	0.85[YRI][hapmap]
rs59084464	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9988844	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10203800-10223800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr11:10208000-10229000	Weak transcription	Aorta	Aorta
3	chr11:10208800-10229400	Weak transcription	NHLF	lung
4	chr11:10209000-10223200	Weak transcription	Left Ventricle	heart
5	chr11:10211000-10224600	Weak transcription	Primary B cells from cord blood	blood
6	chr11:10213600-10224400	Weak transcription	Hela-S3	cervix
7	chr11:10214000-10224800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:10214200-10225200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:10214800-10224400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:10215000-10226200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:10215600-10224400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr11:10219000-10242200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:10219800-10226400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:10221400-10223200	Weak transcription	Psoas Muscle	Psoas
15	chr11:10221600-10223600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:10221600-10227000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:10222600-10223200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:10222800-10223800	Enhancers	Osteobl	bone
19	chr11:10222800-10224000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:10222800-10224000	Enhancers	NHDF-Ad	bronchial

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