Variant report

Variant	rs12293205
Chromosome Location	chr11:10372674-10372675
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11042649	1.00[EUR][1000 genomes]
rs11042660	1.00[EUR][1000 genomes]
rs11042690	1.00[EUR][1000 genomes]
rs11042693	1.00[EUR][1000 genomes]
rs12272934	1.00[EUR][1000 genomes]
rs12274419	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12290428	1.00[EUR][1000 genomes]
rs12291905	1.00[EUR][1000 genomes]
rs13377375	1.00[EUR][1000 genomes]
rs1372813	1.00[EUR][1000 genomes]
rs16907586	1.00[EUR][1000 genomes]
rs16907791	1.00[EUR][1000 genomes]
rs16907823	1.00[EUR][1000 genomes]
rs16907914	1.00[EUR][1000 genomes]
rs59084464	1.00[EUR][1000 genomes]
rs6484281	1.00[EUR][1000 genomes]
rs7102053	1.00[EUR][1000 genomes]
rs7936457	1.00[EUR][1000 genomes]
rs7942864	1.00[EUR][1000 genomes]
rs9666188	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10368800-10373000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:10369600-10374200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:10369800-10373000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:10369800-10373000	Enhancers	Adipose Nuclei	Adipose
5	chr11:10369800-10374000	Enhancers	HSMM	muscle
6	chr11:10369800-10374000	Enhancers	NHDF-Ad	bronchial
7	chr11:10369800-10374200	Enhancers	NHLF	lung
8	chr11:10369800-10378000	Enhancers	Placenta	Placenta
9	chr11:10370000-10372800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:10370000-10373000	Enhancers	HepG2	liver
11	chr11:10370000-10374200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr11:10370000-10374200	Enhancers	Osteobl	bone
13	chr11:10370200-10373200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:10370200-10373200	Enhancers	HSMMtube	muscle
15	chr11:10370200-10374200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:10370600-10373000	Enhancers	Hela-S3	cervix
17	chr11:10370600-10373000	Enhancers	NH-A	brain
18	chr11:10370600-10373600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:10370600-10374200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:10370600-10374200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:10370800-10372800	Weak transcription	Fetal Heart	heart
22	chr11:10370800-10373000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:10371000-10372800	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr11:10371000-10373600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:10371200-10372800	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr11:10371200-10373000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:10371200-10373000	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr11:10371200-10373600	Enhancers	HMEC	breast
29	chr11:10371200-10374000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr11:10371200-10376200	Enhancers	H1 Cell Line	embryonic stem cell
31	chr11:10371600-10373000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:10371600-10373200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr11:10371800-10373000	Weak transcription	Psoas Muscle	Psoas
34	chr11:10371800-10373400	Enhancers	Fetal Intestine Small	intestine
35	chr11:10371800-10374000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:10371800-10374000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:10372000-10373000	Enhancers	Stomach Smooth Muscle	stomach
38	chr11:10372000-10373000	Enhancers	A549	lung
39	chr11:10372000-10373200	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr11:10372000-10373400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr11:10372000-10374000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:10372000-10374000	Enhancers	Fetal Intestine Large	intestine
43	chr11:10372000-10374200	Enhancers	Pancreas	Pancrea
44	chr11:10372000-10374200	Enhancers	Right Atrium	heart
45	chr11:10372000-10374800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr11:10372000-10374800	Enhancers	HUVEC	blood vessel
47	chr11:10372200-10373000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:10372200-10373000	Weak transcription	Lung	lung
49	chr11:10372200-10373400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
50	chr11:10372200-10373400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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