Variant report

Variant	rs16907823
Chromosome Location	chr11:10460596-10460597
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11042690	1.00[EUR][1000 genomes]
rs11042693	1.00[EUR][1000 genomes]
rs12274419	1.00[EUR][1000 genomes]
rs12290428	1.00[EUR][1000 genomes]
rs12291905	1.00[EUR][1000 genomes]
rs12293205	1.00[EUR][1000 genomes]
rs16907791	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16907914	1.00[EUR][1000 genomes]
rs6484281	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102053	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7936457	1.00[EUR][1000 genomes]
rs7942864	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9666188	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv896990	chr11:10458596-10514707	Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10457600-10471800	Weak transcription	NHDF-Ad	bronchial
2	chr11:10458200-10461400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr11:10458600-10463000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:10458800-10463000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:10459000-10461600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:10459000-10463000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:10459400-10465600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr11:10460200-10460600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:10460200-10460800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:10460200-10460800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr11:10460200-10462800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr11:10460400-10462400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:10460400-10463600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr11:10460400-10464800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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