Variant report

Variant	rs7936457
Chromosome Location	chr11:10450863-10450864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11042690	1.00[EUR][1000 genomes]
rs11042693	1.00[EUR][1000 genomes]
rs12274419	1.00[EUR][1000 genomes]
rs12290428	1.00[EUR][1000 genomes]
rs12291905	1.00[EUR][1000 genomes]
rs12293205	1.00[EUR][1000 genomes]
rs1372813	1.00[EUR][1000 genomes]
rs16907791	0.88[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16907823	1.00[EUR][1000 genomes]
rs16907914	1.00[EUR][1000 genomes]
rs6484281	1.00[EUR][1000 genomes]
rs7102053	1.00[EUR][1000 genomes]
rs7942864	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9666188	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10448600-10460000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:10449400-10456000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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