Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10074369..10077326-chr11:10315729..10317721,2	MCF-7	breast:
2	chr11:10075330..10076970-chr11:10327366..10329414,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133812	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11042544	1.00[EUR][1000 genomes]
rs11042546	1.00[EUR][1000 genomes]
rs11042551	1.00[EUR][1000 genomes]
rs11042587	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11042597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042649	1.00[EUR][1000 genomes]
rs11042660	1.00[EUR][1000 genomes]
rs11042690	1.00[EUR][1000 genomes]
rs12270444	1.00[EUR][1000 genomes]
rs12270596	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12272934	1.00[EUR][1000 genomes]
rs12277094	0.95[AFR][1000 genomes]
rs12290428	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12293889	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377319	1.00[EUR][1000 genomes]
rs13377375	1.00[EUR][1000 genomes]
rs1372813	1.00[EUR][1000 genomes]
rs16907586	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56656104	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58442208	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59084464	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9988844	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10066600-10078600	Weak transcription	Aorta	Aorta
2	chr11:10067000-10078400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:10067800-10078200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:10072400-10101200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:10074000-10089200	Weak transcription	Ovary	ovary
6	chr11:10074000-10098200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:10074200-10079200	Weak transcription	Osteobl	bone
8	chr11:10074400-10079200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:10075200-10076000	Enhancers	Hela-S3	cervix
10	chr11:10075400-10079000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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