Variant report

Variant	rs16932417
Chromosome Location	chr11:16025156-16025157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16020621..16022625-chr11:16024207..16026994,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11023812	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11023830	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11023839	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11023841	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11023843	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12365963	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16932443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932499	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16932565	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1045933	chr11:16023805-16067955	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16011000-16033800	Weak transcription	Left Ventricle	heart
2	chr11:16021200-16025400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:16023400-16035400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:16023600-16025200	Enhancers	Fetal Heart	heart
5	chr11:16023600-16025200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr11:16023800-16027600	Weak transcription	K562	blood
7	chr11:16023800-16027800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:16023800-16029200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:16023800-16033200	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:16023800-16033800	Weak transcription	Small Intestine	intestine
11	chr11:16023800-16035000	Weak transcription	Brain Substantia Nigra	brain
12	chr11:16023800-16050400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:16024200-16025200	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr11:16024200-16026600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:16024200-16029600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:16024400-16025200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:16024400-16028000	Weak transcription	Fetal Intestine Large	intestine
18	chr11:16024400-16033000	Weak transcription	Fetal Intestine Small	intestine
19	chr11:16024400-16067200	Weak transcription	Liver	Liver
20	chr11:16024600-16025200	Enhancers	Psoas Muscle	Psoas
21	chr11:16024800-16088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:16025000-16027600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:16025000-16028000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:16025000-16031800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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