Variant report

Variant	rs11023839
Chromosome Location	chr11:16086001-16086002
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11023812	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11023830	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11023841	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11023843	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11023869	0.81[EUR][1000 genomes]
rs11023870	0.81[EUR][1000 genomes]
rs12364006	0.82[EUR][1000 genomes]
rs12365963	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932417	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16932443	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16932499	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932565	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932659	0.82[EUR][1000 genomes]
rs16932672	0.82[EUR][1000 genomes]
rs17536538	0.82[EUR][1000 genomes]
rs1878947	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16024800-16088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:16043000-16102000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:16068800-16103800	Weak transcription	Left Ventricle	heart
4	chr11:16074800-16092200	Weak transcription	Fetal Intestine Small	intestine
5	chr11:16075200-16092600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:16079600-16086400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr11:16083200-16116000	Weak transcription	Fetal Intestine Large	intestine
8	chr11:16083600-16096400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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