Variant report

Variant	rs17536538
Chromosome Location	chr11:16172709-16172710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11023812	1.00[CEU][hapmap]
rs11023830	1.00[CEU][hapmap]
rs11023839	0.82[EUR][1000 genomes]
rs11023841	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11023843	1.00[CEU][hapmap]
rs11023869	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11023870	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12364006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12365963	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs16932443	0.92[CEU][hapmap]
rs16932499	0.82[EUR][1000 genomes]
rs16932565	0.82[EUR][1000 genomes]
rs16932659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16932672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1878947	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16169200-16174200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:16169800-16174400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:16170800-16175800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr11:16171000-16173800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:16171000-16175200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:16171400-16173400	Weak transcription	HepG2	liver
7	chr11:16171600-16175600	Weak transcription	Fetal Intestine Large	intestine
8	chr11:16172000-16173800	Weak transcription	Psoas Muscle	Psoas
9	chr11:16172200-16173000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:16172400-16173000	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr11:16172400-16176000	Weak transcription	Fetal Intestine Small	intestine
12	chr11:16172400-16191400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:16172600-16173600	Weak transcription	Fetal Lung	lung
14	chr11:16172600-16191400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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