Variant report

Variant	rs1878947
Chromosome Location	chr11:16169591-16169592
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11023812	1.00[CEU][hapmap]
rs11023830	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11023839	0.85[EUR][1000 genomes]
rs11023841	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11023843	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11023869	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11023870	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12364006	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12365963	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs16932443	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs16932499	0.85[EUR][1000 genomes]
rs16932565	0.85[EUR][1000 genomes]
rs16932659	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16932672	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17536538	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16163400-16170000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:16168800-16172600	Enhancers	Fetal Lung	lung
3	chr11:16169000-16169800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:16169200-16169600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:16169200-16169800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:16169200-16169800	Enhancers	Brain Anterior Caudate	brain
7	chr11:16169200-16169800	Enhancers	HepG2	liver
8	chr11:16169200-16170000	Enhancers	Brain Substantia Nigra	brain
9	chr11:16169200-16170000	Enhancers	Fetal Kidney	kidney
10	chr11:16169200-16170400	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr11:16169200-16171000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:16169200-16171000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr11:16169200-16171400	Enhancers	Adipose Nuclei	Adipose
14	chr11:16169200-16174200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:16169400-16169600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:16169400-16170200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:16169400-16170600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr11:16169400-16170600	Enhancers	Brain Hippocampus Middle	brain
19	chr11:16169400-16170800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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