Variant report

Variant	rs12364006
Chromosome Location	chr11:16177173-16177174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11023839	0.82[EUR][1000 genomes]
rs11023841	0.81[EUR][1000 genomes]
rs11023869	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11023870	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12365963	0.82[EUR][1000 genomes]
rs16932499	0.82[EUR][1000 genomes]
rs16932565	0.82[EUR][1000 genomes]
rs16932659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17536538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1878947	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16172400-16191400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:16172600-16191400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:16174200-16191200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:16174800-16178400	Enhancers	Stomach Mucosa	stomach
5	chr11:16174800-16180000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:16175000-16178400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:16175000-16180800	Enhancers	NHEK	skin
8	chr11:16175200-16177400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:16175200-16177800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:16175200-16180600	Enhancers	HMEC	breast
11	chr11:16175400-16179000	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr11:16175600-16177600	Flanking Active TSS	A549	lung
13	chr11:16175800-16177200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:16176000-16177600	Enhancers	Fetal Intestine Small	intestine
15	chr11:16176200-16178000	Enhancers	Fetal Intestine Large	intestine
16	chr11:16176200-16178400	Enhancers	HepG2	liver
17	chr11:16176800-16177200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:16177000-16180000	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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