Variant report

Variant	rs11023841
Chromosome Location	chr11:16100532-16100533
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11023812	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11023830	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11023839	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11023843	1.00[CEU][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11023870	1.00[CEU][hapmap]
rs12364006	0.81[EUR][1000 genomes]
rs12365963	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16932417	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16932443	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16932499	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16932565	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16932659	0.81[EUR][1000 genomes]
rs16932672	0.81[EUR][1000 genomes]
rs17536538	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs1878947	1.00[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16043000-16102000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:16068800-16103800	Weak transcription	Left Ventricle	heart
3	chr11:16083200-16116000	Weak transcription	Fetal Intestine Large	intestine
4	chr11:16089400-16117400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:16093400-16103200	Weak transcription	Fetal Intestine Small	intestine
6	chr11:16097000-16115600	Weak transcription	Psoas Muscle	Psoas
7	chr11:16097200-16103800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:16097200-16104400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:16098400-16104200	Weak transcription	Liver	Liver
10	chr11:16098600-16137000	Weak transcription	Pancreas	Pancrea
11	chr11:16099000-16103200	Weak transcription	Fetal Lung	lung
12	chr11:16099800-16100600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:16099800-16102200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:16100000-16103400	Weak transcription	Brain Germinal Matrix	brain
15	chr11:16100400-16101800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:16100400-16107800	Weak transcription	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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