Variant report

Variant	rs11023843
Chromosome Location	chr11:16112180-16112181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11023812	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11023830	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11023839	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11023841	1.00[CEU][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11023870	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12365963	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16932417	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16932443	0.91[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16932499	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16932565	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17536538	1.00[CEU][hapmap]
rs1878947	1.00[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16083200-16116000	Weak transcription	Fetal Intestine Large	intestine
2	chr11:16089400-16117400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:16097000-16115600	Weak transcription	Psoas Muscle	Psoas
4	chr11:16098600-16137000	Weak transcription	Pancreas	Pancrea
5	chr11:16104600-16114400	Weak transcription	Liver	Liver
6	chr11:16104800-16112600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:16108200-16112600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:16108200-16113800	Weak transcription	Brain Germinal Matrix	brain
9	chr11:16108200-16114200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:16108400-16112600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:16108400-16118400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:16108800-16112600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:16112000-16112200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr11:16112000-16112800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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