Variant report

Variant	rs16932443
Chromosome Location	chr11:16034484-16034485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16033382..16036196-chr11:16045412..16048891,3	K562	blood:
2	chr11:16034162..16035790-chr11:16047391..16049636,2	K562	blood:
3	chr11:16032786..16036451-chr11:16039084..16041674,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11023812	0.91[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11023830	0.91[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11023839	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11023841	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11023843	0.91[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11023870	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs12365963	0.91[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16932417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932499	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16932565	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17536538	0.92[CEU][hapmap]
rs1878947	0.92[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1045933	chr11:16023805-16067955	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16023400-16035400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:16023800-16035000	Weak transcription	Brain Substantia Nigra	brain
3	chr11:16023800-16050400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:16024400-16067200	Weak transcription	Liver	Liver
5	chr11:16024800-16088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:16025200-16034800	Weak transcription	Psoas Muscle	Psoas
7	chr11:16028000-16036800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:16029600-16034800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:16032400-16036000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:16032600-16035000	Enhancers	K562	blood
11	chr11:16033000-16034800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:16033000-16035000	Strong transcription	Fetal Intestine Small	intestine
13	chr11:16033000-16038200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr11:16033200-16038200	Enhancers	Fetal Muscle Leg	muscle
15	chr11:16033400-16036000	Enhancers	Fetal Kidney	kidney
16	chr11:16033800-16036000	Enhancers	Fetal Heart	heart
17	chr11:16033800-16036000	Enhancers	Left Ventricle	heart
18	chr11:16033800-16036000	Enhancers	Right Atrium	heart
19	chr11:16034000-16035600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:16034000-16036000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr11:16034000-16037800	Strong transcription	Fetal Intestine Large	intestine
22	chr11:16034200-16034800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:16034200-16035000	Weak transcription	Placenta	Placenta
24	chr11:16034200-16035400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr11:16034200-16035400	Weak transcription	HSMMtube	muscle
26	chr11:16034200-16035400	Weak transcription	NHLF	lung
27	chr11:16034200-16038000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:16034200-16040600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr11:16034200-16079200	Weak transcription	Pancreas	Pancrea
30	chr11:16034400-16034600	Weak transcription	Fetal Lung	lung
31	chr11:16034400-16035600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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