Variant report

Variant	rs12365963
Chromosome Location	chr11:16129777-16129778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11023812	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11023830	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11023839	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11023841	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11023843	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11023869	0.81[EUR][1000 genomes]
rs11023870	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs12364006	0.82[EUR][1000 genomes]
rs16932417	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16932443	0.91[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16932499	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932659	0.82[EUR][1000 genomes]
rs16932672	0.82[EUR][1000 genomes]
rs17536538	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1878947	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16098600-16137000	Weak transcription	Pancreas	Pancrea
2	chr11:16119600-16130200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:16120800-16130800	Weak transcription	Esophagus	oesophagus
4	chr11:16121600-16135400	Weak transcription	Fetal Intestine Large	intestine
5	chr11:16121800-16136800	Weak transcription	Small Intestine	intestine
6	chr11:16122400-16132400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:16127200-16130800	Weak transcription	Fetal Intestine Small	intestine
8	chr11:16127400-16133200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:16127400-16136000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:16128200-16132400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:16128400-16133200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:16128600-16132400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:16128600-16133200	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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