Variant report

Variant	rs16932672
Chromosome Location	chr11:16196769-16196770
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11023839	0.82[EUR][1000 genomes]
rs11023841	0.81[EUR][1000 genomes]
rs11023869	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11023870	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12364006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12365963	0.82[EUR][1000 genomes]
rs16932499	0.82[EUR][1000 genomes]
rs16932565	0.82[EUR][1000 genomes]
rs16932659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17536538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1878947	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv897012	chr11:16189326-16283644	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16185800-16205600	Weak transcription	Fetal Intestine Large	intestine
2	chr11:16189400-16199200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:16191800-16199600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:16193400-16204800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:16193800-16199400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:16194000-16200200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:16194200-16199400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:16194200-16201000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:16194400-16199400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:16194400-16200200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:16194600-16199400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:16194800-16199200	Weak transcription	K562	blood
13	chr11:16194800-16199400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:16194800-16201000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:16194800-16206200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:16195400-16196800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:16196400-16197000	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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