Variant report

Variant	rs16943691
Chromosome Location	chr15:45748966-45748967
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL1	chr15:45748783-45749108	K562	blood:	n/a	chr15:45748929-45748938 chr15:45748992-45749004 chr15:45748993-45749003 chr15:45748993-45749003 chr15:45748993-45749002 chr15:45748993-45749003
2	JUND	chr15:45748688-45749225	K562	blood:	n/a	chr15:45748929-45748938 chr15:45748992-45749004 chr15:45748993-45749003 chr15:45748993-45749003 chr15:45748993-45749002 chr15:45748993-45749003
3	TEAD4	chr15:45748663-45749257	HCT-116	colon:	n/a	chr15:45748943-45748952
4	TEAD4	chr15:45748752-45749150	K562	blood:	n/a	chr15:45748943-45748952
5	RCOR1	chr15:45748673-45749302	Hela-S3	cervix:	n/a	n/a
6	EP300	chr15:45748872-45749041	GM12878	blood:	n/a	chr15:45748994-45749003
7	JUND	chr15:45748194-45750692	SK-N-SH	brain:	n/a	chr15:45748929-45748938 chr15:45748992-45749004 chr15:45748993-45749003 chr15:45748993-45749003 chr15:45748993-45749002 chr15:45748993-45749003 chr15:45749399-45749408
8	RFX5	chr15:45748892-45748986	HepG2	liver:	n/a	n/a
9	MAX	chr15:45748413-45749280	HCT-116	colon:	n/a	chr15:45748551-45748561
10	YY1	chr15:45748635-45749223	SK-N-SH	brain:	n/a	n/a
11	FOSL2	chr15:45748636-45749251	A549	lung:	n/a	chr15:45748929-45748938 chr15:45748992-45749004 chr15:45748993-45749003 chr15:45748993-45749003 chr15:45748993-45749002 chr15:45748993-45749003
12	MYC	chr15:45748569-45749209	MCF10A-Er-Src	breast:	n/a	n/a
13	FOS	chr15:45748478-45749195	Hela-S3	cervix:	n/a	chr15:45748929-45748938 chr15:45748992-45749004 chr15:45748993-45749003 chr15:45748993-45749003 chr15:45748993-45749002 chr15:45748992-45749003 chr15:45748993-45749003
14	BHLHE40	chr15:45748814-45749116	K562	blood:	n/a	n/a
15	UBTF	chr15:45748903-45749113	K562	blood:	n/a	n/a
16	EP300	chr15:45748862-45749099	K562	blood:	n/a	chr15:45748994-45749003
17	JUND	chr15:45748395-45749323	GM12878	blood:	n/a	chr15:45748929-45748938 chr15:45748992-45749004 chr15:45748993-45749003 chr15:45748993-45749003 chr15:45748993-45749002 chr15:45748993-45749003
18	CREB1	chr15:45748658-45749191	K562	blood:	n/a	chr15:45748927-45748940
19	BRCA1	chr15:45748714-45749487	Hela-S3	cervix:	n/a	n/a
20	NFYB	chr15:45748901-45749062	GM12878	blood:	n/a	n/a
21	FOSL1	chr15:45748727-45749199	K562	blood:	n/a	chr15:45748929-45748938 chr15:45748992-45749004 chr15:45748993-45749003 chr15:45748993-45749003 chr15:45748993-45749002 chr15:45748993-45749003
22	TCF7L2	chr15:45748611-45749123	PANC-1	pancreas:	n/a	chr15:45748993-45749002
23	ATF3	chr15:45748741-45749190	A549	lung:	n/a	chr15:45748930-45748937 chr15:45748926-45748937 chr15:45748927-45748937 chr15:45748926-45748941 chr15:45748926-45748939 chr15:45748927-45748940 chr15:45748930-45748938 chr15:45748929-45748937 chr15:45748929-45748940
24	JUND	chr15:45748521-45749327	SK-N-SH	brain:	n/a	chr15:45748929-45748938 chr15:45748992-45749004 chr15:45748993-45749003 chr15:45748993-45749003 chr15:45748993-45749002 chr15:45748993-45749003
25	YY1	chr15:45748761-45749057	HCT-116	colon:	n/a	n/a
26	FOSL2	chr15:45748754-45749099	HepG2	liver:	n/a	chr15:45748929-45748938 chr15:45748992-45749004 chr15:45748993-45749003 chr15:45748993-45749003 chr15:45748993-45749002 chr15:45748993-45749003
27	EP300	chr15:45748649-45749270	A549	lung:	n/a	chr15:45748994-45749003
28	EP300	chr15:45748809-45749143	SK-N-SH_RA	brain:	n/a	chr15:45748994-45749003
29	MAX	chr15:45748722-45749148	ECC-1	luminal epithelium:	n/a	n/a
30	RFX5	chr15:45748787-45749142	Hela-S3	cervix:	n/a	n/a
31	MXI1	chr15:45748838-45749237	HepG2	liver:	n/a	n/a
32	JUND	chr15:45748595-45749328	HCT-116	colon:	n/a	chr15:45748929-45748938 chr15:45748992-45749004 chr15:45748993-45749003 chr15:45748993-45749003 chr15:45748993-45749002 chr15:45748993-45749003
33	JUND	chr15:45748728-45749137	A549	lung:	n/a	chr15:45748929-45748938 chr15:45748992-45749004 chr15:45748993-45749003 chr15:45748993-45749003 chr15:45748993-45749002 chr15:45748993-45749003
34	ATF3	chr15:45748814-45749100	K562	blood:	n/a	chr15:45748930-45748937 chr15:45748926-45748937 chr15:45748927-45748937 chr15:45748926-45748941 chr15:45748926-45748939 chr15:45748927-45748940 chr15:45748930-45748938 chr15:45748929-45748937 chr15:45748929-45748940
35	FOSL2	chr15:45748755-45749283	SK-N-SH	brain:	n/a	chr15:45748929-45748938 chr15:45748992-45749004 chr15:45748993-45749003 chr15:45748993-45749003 chr15:45748993-45749002 chr15:45748993-45749003
36	FOSL1	chr15:45748690-45749319	HCT-116	colon:	n/a	chr15:45748929-45748938 chr15:45748992-45749004 chr15:45748993-45749003 chr15:45748993-45749003 chr15:45748993-45749002 chr15:45748993-45749003
37	TAF1	chr15:45748713-45749192	Hela-S3	cervix:	n/a	n/a
38	CEBPB	chr15:45748497-45749281	IMR90	lung:	n/a	n/a
39	SMC3	chr15:45748640-45751360	Hela-S3	cervix:	n/a	chr15:45749923-45749937 chr15:45750312-45750326 chr15:45751151-45751165
40	E2F4	chr15:45748867-45749173	MCF10A-Er-Src	breast:	n/a	chr15:45748930-45748939 chr15:45748928-45748937
41	RUNX3	chr15:45748726-45749252	GM12878	blood:	n/a	n/a
42	MAFK	chr15:45748717-45749228	Hela-S3	cervix:	n/a	n/a
43	STAT3	chr15:45748532-45749183	MCF10A-Er-Src	breast:	n/a	chr15:45748993-45749002
44	CEBPB	chr15:45748435-45749254	Hela-S3	cervix:	n/a	n/a
45	CBX3	chr15:45748768-45749143	K562	blood:	n/a	n/a
46	FOS	chr15:45748601-45749210	MCF10A-Er-Src	breast:	n/a	chr15:45748929-45748938 chr15:45748992-45749004 chr15:45748993-45749003 chr15:45748993-45749003 chr15:45748993-45749002 chr15:45748992-45749003 chr15:45748993-45749003
47	FOSL2	chr15:45748612-45749405	SK-N-SH	brain:	n/a	chr15:45748929-45748938 chr15:45748992-45749004 chr15:45748993-45749003 chr15:45748993-45749003 chr15:45748993-45749002 chr15:45748993-45749003
48	EP300	chr15:45748739-45749199	Hela-S3	cervix:	n/a	chr15:45748994-45749003
49	YY1	chr15:45748779-45749002	K562	blood:	n/a	n/a
50	STAT3	chr15:45748559-45749205	MCF10A-Er-Src	breast:	n/a	chr15:45748993-45749002

No.	Distal block	Cell Line	Cell type
1	chr15:45721836..45723115-chr15:45748925..45751188,14	K562	blood:
2	chr15:45745258..45747507-chr15:45747517..45749111,2	MCF-7	breast:
3	chr15:45722040..45723226-chr15:45748321..45751272,60	MCF-7	breast:
4	chr15:45693234..45695210-chr15:45748321..45750226,2	MCF-7	breast:
5	chr15:45457607..45459113-chr15:45748789..45750442,2	K562	blood:
6	chr15:45457588..45459238-chr15:45747257..45749159,2	K562	blood:
7	chr15:45459360..45460864-chr15:45748404..45750669,2	K562	blood:
8	chr15:45737247..45739664-chr15:45747415..45750054,2	K562	blood:
9	chr15:45497493..45498035-chr15:45748602..45749386,2	K562	blood:

Variant related genes	Relation type
ENSG00000259354	TF binding region
ENSG00000171763	Chromatin interaction
ENSG00000166920	Chromatin interaction
ENSG00000259539	Chromatin interaction
ENSG00000252285	Chromatin interaction
ENSG00000171766	Chromatin interaction

Extended variants
information (count: 143 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:138)

rs_ID	r²[population]
rs1005072	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10152775	0.84[AMR][1000 genomes]
rs10152792	0.84[AMR][1000 genomes]
rs1153836	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1153837	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1153839	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1153840	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1153841	1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1153842	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1153843	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1153844	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1288647	1.00[EUR][1000 genomes]
rs1288848	1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1288849	1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1288850	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1288851	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1288853	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1288854	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1288855	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1288856	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1288857	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1288858	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1288859	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1288864	1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1295500	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1295501	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1426933	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1426934	1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529353	0.84[AMR][1000 genomes]
rs1547488	1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547489	1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547490	1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1559891	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1559892	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1629849	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1629871	1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1648875	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16943587	1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16943731	1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16944196	1.00[EUR][1000 genomes]
rs1768457	1.00[EUR][1000 genomes]
rs1820519	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1834689	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs1834691	1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1970374	0.84[AMR][1000 genomes]
rs2059661	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2059662	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2412958	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2433613	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2433614	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2433615	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2433622	1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2433623	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2433624	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2433625	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2433626	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2433627	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2433628	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2453514	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2453515	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2453516	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2453517	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2453519	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2453520	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2453521	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2453549	1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467861	1.00[EUR][1000 genomes]
rs2467874	1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467875	1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467876	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467878	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467879	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467880	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467882	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467883	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467884	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467885	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467886	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467887	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467888	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2467889	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2486279	1.00[EUR][1000 genomes]
rs2486283	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2486284	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858908	0.84[AMR][1000 genomes]
rs57255527	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57421622	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58694071	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61169737	0.84[AMR][1000 genomes]
rs61756712	0.84[AMR][1000 genomes]
rs6493153	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7165846	0.84[AMR][1000 genomes]
rs7168672	0.84[AMR][1000 genomes]
rs7170941	0.84[AMR][1000 genomes]
rs7173046	0.84[AMR][1000 genomes]
rs73410550	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410575	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410577	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412436	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412437	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412438	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412440	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412443	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412445	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412447	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412449	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412452	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412453	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412454	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412456	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412457	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412459	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412460	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412466	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412470	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73412473	1.00[EUR][1000 genomes]
rs73412479	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412484	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412488	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412490	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73414454	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73414486	0.84[AMR][1000 genomes]
rs73416403	0.84[AMR][1000 genomes]
rs73416407	0.84[AMR][1000 genomes]
rs73416479	0.84[AMR][1000 genomes]
rs73416484	0.82[AMR][1000 genomes]
rs73416487	0.84[AMR][1000 genomes]
rs7495403	0.84[AMR][1000 genomes]
rs8029983	0.84[AMR][1000 genomes]
rs8034420	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8042179	0.84[AMR][1000 genomes]
rs937323	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs937324	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs937325	1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9672808	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv569315	chr15:45446156-45772448	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv469721	chr15:45608881-45788002	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	nsv482380	chr15:45608881-45788002	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45745200-45749800	Weak transcription	Liver	Liver
2	chr15:45746000-45750000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:45746000-45750000	Enhancers	Stomach Mucosa	stomach
4	chr15:45746200-45749800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:45746200-45750000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr15:45746200-45750000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr15:45746200-45750000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:45746200-45750000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr15:45746200-45750800	Enhancers	Placenta Amnion	Placenta Amnion
10	chr15:45746400-45749800	Enhancers	Primary B cells from cord blood	blood
11	chr15:45746400-45749800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr15:45746400-45750000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr15:45746400-45750000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr15:45746400-45750000	Enhancers	Placenta	Placenta
15	chr15:45746600-45749000	Enhancers	Thymus	Thymus
16	chr15:45746600-45749800	Enhancers	Primary hematopoietic stem cells	blood
17	chr15:45746600-45750000	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr15:45746600-45750000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr15:45746600-45750000	Enhancers	HSMM	muscle
20	chr15:45746800-45749400	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr15:45746800-45750000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr15:45746800-45750000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr15:45746800-45750000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr15:45746800-45750000	Enhancers	NHDF-Ad	bronchial
25	chr15:45746800-45750400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:45747000-45750000	Weak transcription	Fetal Heart	heart
27	chr15:45747200-45750000	Enhancers	NHLF	lung
28	chr15:45747400-45749800	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr15:45747400-45749800	Enhancers	Colonic Mucosa	Colon
30	chr15:45747600-45749000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr15:45747600-45749200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr15:45747600-45749400	Enhancers	NH-A	brain
33	chr15:45747600-45749600	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr15:45747600-45749800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:45747600-45749800	Enhancers	Dnd41	blood
36	chr15:45747600-45750000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr15:45747600-45750000	Enhancers	Primary T cells fromperipheralblood	blood
38	chr15:45747600-45750000	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr15:45747600-45750000	Enhancers	Muscle Satellite Cultured Cells	--
40	chr15:45747800-45749000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:45747800-45749200	Weak transcription	Brain Hippocampus Middle	brain
42	chr15:45747800-45749400	Weak transcription	Primary T cells from cord blood	blood
43	chr15:45747800-45749400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr15:45747800-45749600	Weak transcription	Fetal Thymus	thymus
45	chr15:45747800-45749800	Enhancers	GM12878-XiMat	blood
46	chr15:45747800-45750000	Enhancers	Primary B cells from peripheral blood	blood
47	chr15:45747800-45750000	Weak transcription	Adipose Nuclei	Adipose
48	chr15:45748400-45749000	Enhancers	Fetal Stomach	stomach
49	chr15:45748400-45749200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
50	chr15:45748400-45749200	Enhancers	HSMMtube	muscle

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