Variant report

Variant	rs9672808
Chromosome Location	chr15:45764373-45764374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 169 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:163)

rs_ID	r²[population]
rs1005072	1.00[EUR][1000 genomes]
rs10152775	0.84[AMR][1000 genomes]
rs10152792	0.84[AMR][1000 genomes]
rs1153836	1.00[EUR][1000 genomes]
rs1153837	1.00[EUR][1000 genomes]
rs1153839	1.00[EUR][1000 genomes]
rs1153840	1.00[EUR][1000 genomes]
rs1153841	1.00[EUR][1000 genomes]
rs1153842	1.00[EUR][1000 genomes]
rs1153843	1.00[EUR][1000 genomes]
rs1153844	1.00[EUR][1000 genomes]
rs1288647	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1288848	1.00[EUR][1000 genomes]
rs1288849	1.00[EUR][1000 genomes]
rs1288850	1.00[EUR][1000 genomes]
rs1288851	1.00[EUR][1000 genomes]
rs1288853	1.00[EUR][1000 genomes]
rs1288854	1.00[EUR][1000 genomes]
rs1288855	1.00[EUR][1000 genomes]
rs1288856	1.00[EUR][1000 genomes]
rs1288857	1.00[EUR][1000 genomes]
rs1288858	1.00[EUR][1000 genomes]
rs1288859	1.00[EUR][1000 genomes]
rs1288864	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1295500	1.00[EUR][1000 genomes]
rs1295501	1.00[EUR][1000 genomes]
rs1426933	1.00[EUR][1000 genomes]
rs1426934	1.00[EUR][1000 genomes]
rs1529353	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1529354	1.00[ASN][1000 genomes]
rs1547488	1.00[EUR][1000 genomes]
rs1547489	1.00[EUR][1000 genomes]
rs1547490	1.00[EUR][1000 genomes]
rs1559891	1.00[EUR][1000 genomes]
rs1559892	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1629849	1.00[EUR][1000 genomes]
rs1629871	1.00[EUR][1000 genomes]
rs1648875	1.00[EUR][1000 genomes]
rs16943587	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16943691	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16943731	1.00[EUR][1000 genomes]
rs16944196	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16944305	1.00[ASN][1000 genomes]
rs1768457	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1834689	1.00[EUR][1000 genomes]
rs1834691	1.00[EUR][1000 genomes]
rs1970374	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2059661	1.00[EUR][1000 genomes]
rs2059662	1.00[EUR][1000 genomes]
rs2412958	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2433613	1.00[EUR][1000 genomes]
rs2433614	1.00[EUR][1000 genomes]
rs2433615	1.00[EUR][1000 genomes]
rs2433622	1.00[EUR][1000 genomes]
rs2433623	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2433624	1.00[EUR][1000 genomes]
rs2433625	1.00[EUR][1000 genomes]
rs2433626	1.00[EUR][1000 genomes]
rs2433627	1.00[EUR][1000 genomes]
rs2433628	1.00[EUR][1000 genomes]
rs2453514	1.00[EUR][1000 genomes]
rs2453516	1.00[EUR][1000 genomes]
rs2453517	1.00[EUR][1000 genomes]
rs2453519	1.00[EUR][1000 genomes]
rs2453520	1.00[EUR][1000 genomes]
rs2453521	1.00[EUR][1000 genomes]
rs2453549	1.00[EUR][1000 genomes]
rs2467861	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467874	1.00[EUR][1000 genomes]
rs2467875	1.00[EUR][1000 genomes]
rs2467876	1.00[EUR][1000 genomes]
rs2467878	1.00[EUR][1000 genomes]
rs2467879	1.00[EUR][1000 genomes]
rs2467880	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2467882	1.00[EUR][1000 genomes]
rs2467883	1.00[EUR][1000 genomes]
rs2467884	1.00[EUR][1000 genomes]
rs2467885	1.00[EUR][1000 genomes]
rs2467886	1.00[EUR][1000 genomes]
rs2467887	1.00[EUR][1000 genomes]
rs2467889	1.00[EUR][1000 genomes]
rs2486279	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2486283	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2486284	1.00[EUR][1000 genomes]
rs3858908	0.84[AMR][1000 genomes]
rs57255527	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57421622	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57668312	1.00[ASN][1000 genomes]
rs58055978	0.84[AMR][1000 genomes]
rs58078831	0.84[AMR][1000 genomes]
rs58694071	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61169737	0.84[AMR][1000 genomes]
rs61186343	0.84[AMR][1000 genomes]
rs61500896	0.84[AMR][1000 genomes]
rs61756712	0.84[AMR][1000 genomes]
rs6493153	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493159	0.91[AMR][1000 genomes]
rs7163098	1.00[ASN][1000 genomes]
rs7165846	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7166434	1.00[ASN][1000 genomes]
rs7168672	0.84[AMR][1000 genomes]
rs7170941	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7173046	0.84[AMR][1000 genomes]
rs73410550	1.00[EUR][1000 genomes]
rs73410575	1.00[EUR][1000 genomes]
rs73410577	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412436	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412437	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412438	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412440	1.00[EUR][1000 genomes]
rs73412443	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412445	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412447	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412449	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412452	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412453	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412454	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412456	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412457	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412459	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412460	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412462	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412463	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412466	1.00[EUR][1000 genomes]
rs73412467	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412470	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412473	1.00[EUR][1000 genomes]
rs73412479	1.00[EUR][1000 genomes]
rs73412484	1.00[EUR][1000 genomes]
rs73412488	1.00[EUR][1000 genomes]
rs73412490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73414454	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73414486	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73416403	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73416407	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73416479	0.84[AMR][1000 genomes]
rs73416484	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73416487	0.84[AMR][1000 genomes]
rs73416493	0.91[AMR][1000 genomes]
rs73418308	0.84[AMR][1000 genomes]
rs73418310	0.91[AMR][1000 genomes]
rs73418311	0.91[AMR][1000 genomes]
rs73418314	0.91[AMR][1000 genomes]
rs73418316	0.91[AMR][1000 genomes]
rs73418320	0.91[AMR][1000 genomes]
rs73418387	0.84[AMR][1000 genomes]
rs73418395	0.84[AMR][1000 genomes]
rs73418401	0.91[AMR][1000 genomes]
rs73420403	0.84[AMR][1000 genomes]
rs73420405	0.84[AMR][1000 genomes]
rs73420406	0.84[AMR][1000 genomes]
rs73420408	0.84[AMR][1000 genomes]
rs73420409	0.84[AMR][1000 genomes]
rs73420412	0.84[AMR][1000 genomes]
rs73420415	0.84[AMR][1000 genomes]
rs7495403	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8026780	0.91[AMR][1000 genomes]
rs8029983	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8034420	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042179	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs937323	1.00[EUR][1000 genomes]
rs937324	1.00[EUR][1000 genomes]
rs937325	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv569315	chr15:45446156-45772448	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv469721	chr15:45608881-45788002	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	nsv482380	chr15:45608881-45788002	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv1523	chr15:45749900-45783825	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45750800-45781000	Weak transcription	Stomach Mucosa	stomach
2	chr15:45751200-45801600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:45754200-45801600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:45757000-45794600	Weak transcription	Colonic Mucosa	Colon
5	chr15:45757000-45801800	Weak transcription	Gastric	stomach
6	chr15:45759800-45768600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:45760800-45772800	Weak transcription	HSMMtube	muscle
8	chr15:45761000-45768800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr15:45761600-45765000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:45761800-45768400	Weak transcription	Fetal Intestine Small	intestine
11	chr15:45762000-45773800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:45762400-45768200	Weak transcription	Fetal Intestine Large	intestine
13	chr15:45763000-45764400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
14	chr15:45763400-45777200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr15:45763600-45764400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
16	chr15:45763600-45764400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:45763600-45764400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:45763800-45764400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
19	chr15:45763800-45765200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
20	chr15:45764000-45764400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
21	chr15:45764200-45765000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links