Variant report

Variant	rs73420408
Chromosome Location	chr15:45866102-45866103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:45864613..45866606-chr15:45876015..45877880,2	MCF-7	breast:
2	chr15:45750350..45751309-chr15:45865938..45866882,2	K562	blood:
3	chr15:45859930..45861832-chr15:45865060..45867024,2	K562	blood:
4	chr10:114710953..114711922-chr15:45865867..45866632,2	HCT-116	colon:

Variant related genes	Relation type
ENSG00000259354	Chromatin interaction
ENSG00000233547	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10152775	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10152792	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1442797	0.86[AMR][1000 genomes]
rs1529353	1.00[EUR][1000 genomes]
rs1529354	1.00[EUR][1000 genomes]
rs16944305	1.00[EUR][1000 genomes]
rs1970374	1.00[EUR][1000 genomes]
rs3858908	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4598849	0.86[AMR][1000 genomes]
rs57668312	1.00[EUR][1000 genomes]
rs58055978	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58078831	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61169737	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61186343	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61500896	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61756712	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6493159	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7163098	1.00[EUR][1000 genomes]
rs7165846	1.00[EUR][1000 genomes]
rs7166434	1.00[EUR][1000 genomes]
rs7168672	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7170941	1.00[EUR][1000 genomes]
rs7173046	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs719018	0.86[AMR][1000 genomes]
rs719019	0.86[AMR][1000 genomes]
rs73414486	1.00[EUR][1000 genomes]
rs73416403	1.00[EUR][1000 genomes]
rs73416407	1.00[EUR][1000 genomes]
rs73416479	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73416484	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73416487	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73416493	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418308	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418310	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418311	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418314	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418316	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418320	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418387	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418395	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418401	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73420403	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73420405	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73420406	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73420409	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73420412	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73420415	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73420427	0.86[AMR][1000 genomes]
rs73420437	0.86[AMR][1000 genomes]
rs73420438	0.86[AMR][1000 genomes]
rs7342662	0.86[AMR][1000 genomes]
rs7495403	1.00[EUR][1000 genomes]
rs751819	0.86[AMR][1000 genomes]
rs8025600	0.86[AMR][1000 genomes]
rs8026780	0.92[AMR][1000 genomes]
rs8027324	0.86[AMR][1000 genomes]
rs8029983	1.00[EUR][1000 genomes]
rs8042179	1.00[EUR][1000 genomes]
rs8042253	0.93[AMR][1000 genomes]
rs8042662	0.86[AMR][1000 genomes]
rs9672808	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv1045556	chr15:45777396-45884854	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv904188	chr15:45801035-45941689	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45859200-45866400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:45864400-45866400	Enhancers	Primary B cells from peripheral blood	blood
3	chr15:45866000-45866200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:45866000-45866200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
5	chr15:45866000-45866200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:45866000-45866400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr15:45866000-45866600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:45866000-45866600	Flanking Active TSS	HepG2	liver
9	chr15:45866000-45866800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr15:45866000-45866800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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