Variant report

Variant	rs6493159
Chromosome Location	chr15:45841888-45841889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:45841609..45843950-chr15:45877578..45879390,2	K562	blood:
2	chr15:45839175..45843127-chr15:45877708..45881310,7	K562	blood:
3	chr15:45790676..45792574-chr15:45839895..45841978,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104164	Chromatin interaction
ENSG00000260170	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10152775	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10152792	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1295500	0.83[AMR][1000 genomes]
rs1529353	1.00[EUR][1000 genomes]
rs1529354	1.00[EUR][1000 genomes]
rs16944305	1.00[EUR][1000 genomes]
rs1970374	1.00[EUR][1000 genomes]
rs3858908	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57668312	1.00[EUR][1000 genomes]
rs58055978	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58078831	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61169737	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61186343	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61500896	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61756712	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7163098	1.00[EUR][1000 genomes]
rs7165846	1.00[EUR][1000 genomes]
rs7166434	1.00[EUR][1000 genomes]
rs7168672	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7170941	1.00[EUR][1000 genomes]
rs7173046	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73414486	1.00[EUR][1000 genomes]
rs73416403	1.00[EUR][1000 genomes]
rs73416407	1.00[EUR][1000 genomes]
rs73416479	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73416484	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73416487	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73416493	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418308	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418310	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418311	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418314	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418316	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418320	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418387	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418395	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418401	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73420403	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73420405	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73420406	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73420408	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73420409	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73420412	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73420415	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7495403	1.00[EUR][1000 genomes]
rs8026780	1.00[AMR][1000 genomes]
rs8029983	1.00[EUR][1000 genomes]
rs8042179	1.00[EUR][1000 genomes]
rs8042253	0.85[AMR][1000 genomes]
rs9672808	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv1045556	chr15:45777396-45884854	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv904188	chr15:45801035-45941689	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45840600-45842800	Enhancers	HSMMtube	muscle
2	chr15:45841000-45842400	Enhancers	NHDF-Ad	bronchial
3	chr15:45841200-45844600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr15:45841400-45842200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:45841400-45842800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr15:45841600-45842400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:45841600-45842400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:45841600-45842600	Enhancers	NHEK	skin
9	chr15:45841600-45842600	Enhancers	Osteobl	bone
10	chr15:45841600-45842800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr15:45841800-45842000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:45841800-45842400	Flanking Active TSS	Hela-S3	cervix
13	chr15:45841800-45842600	Enhancers	HMEC	breast
14	chr15:45841800-45842800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:45841800-45842800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:45841800-45843600	Weak transcription	HSMM	muscle

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