Variant report

Variant	rs8029983
Chromosome Location	chr15:45802364-45802365
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45801393..45804941-chr15:45813631..45816253,3	MCF-7	breast:
2	chr15:45800845..45803632-chr15:45812326..45814076,2	K562	blood:

Variant related genes	Relation type
ENSG00000179362	Chromatin interaction
ENSG00000104154	Chromatin interaction

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10152775	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10152792	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1153841	1.00[MEX][hapmap]
rs1288647	1.00[ASN][1000 genomes]
rs1288849	1.00[MEX][hapmap]
rs1288864	0.84[AMR][1000 genomes]
rs13376	1.00[MEX][hapmap];0.86[AMR][1000 genomes]
rs1442797	1.00[MEX][hapmap];0.86[AMR][1000 genomes]
rs1529353	0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529354	0.83[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547488	1.00[MEX][hapmap]
rs1547489	1.00[MEX][hapmap]
rs1547490	1.00[MEX][hapmap]
rs1559892	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1629871	1.00[MEX][hapmap]
rs16943587	0.84[AMR][1000 genomes]
rs16943691	0.84[AMR][1000 genomes]
rs16944196	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16944305	0.83[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945588	1.00[MEX][hapmap];0.93[AMR][1000 genomes]
rs16945605	0.93[AMR][1000 genomes]
rs1768457	1.00[ASN][1000 genomes]
rs1970374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2120016	0.89[YRI][hapmap]
rs2412958	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2433623	0.84[AMR][1000 genomes]
rs2467861	1.00[ASN][1000 genomes]
rs2467874	1.00[MEX][hapmap]
rs2467875	1.00[MEX][hapmap]
rs2467880	0.84[AMR][1000 genomes]
rs2486279	1.00[ASN][1000 genomes]
rs2486283	0.84[AMR][1000 genomes]
rs3858908	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4598849	0.86[AMR][1000 genomes]
rs57255527	0.84[AMR][1000 genomes]
rs57263027	0.93[AMR][1000 genomes]
rs57421622	0.84[AMR][1000 genomes]
rs57668312	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58055978	1.00[EUR][1000 genomes]
rs58078831	1.00[EUR][1000 genomes]
rs58694071	0.84[AMR][1000 genomes]
rs60561729	0.86[AMR][1000 genomes]
rs61169737	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61186343	1.00[EUR][1000 genomes]
rs61500896	1.00[EUR][1000 genomes]
rs61756712	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6493153	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6493159	1.00[EUR][1000 genomes]
rs679569	1.00[MEX][hapmap];0.93[AMR][1000 genomes]
rs7163098	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165846	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7166434	0.83[ASW][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7168313	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7168672	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7170941	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7173046	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7183382	1.00[MEX][hapmap];0.86[AMR][1000 genomes]
rs719018	1.00[MEX][hapmap];0.86[AMR][1000 genomes]
rs719019	1.00[MEX][hapmap];0.86[AMR][1000 genomes]
rs73410577	0.84[AMR][1000 genomes]
rs73412436	0.84[AMR][1000 genomes]
rs73412437	0.84[AMR][1000 genomes]
rs73412438	0.84[AMR][1000 genomes]
rs73412443	0.84[AMR][1000 genomes]
rs73412445	0.84[AMR][1000 genomes]
rs73412447	0.84[AMR][1000 genomes]
rs73412449	0.84[AMR][1000 genomes]
rs73412452	0.84[AMR][1000 genomes]
rs73412453	0.84[AMR][1000 genomes]
rs73412454	0.84[AMR][1000 genomes]
rs73412456	0.84[AMR][1000 genomes]
rs73412457	0.84[AMR][1000 genomes]
rs73412459	0.84[AMR][1000 genomes]
rs73412460	0.84[AMR][1000 genomes]
rs73412462	0.84[AMR][1000 genomes]
rs73412463	0.84[AMR][1000 genomes]
rs73412467	0.84[AMR][1000 genomes]
rs73412470	0.84[AMR][1000 genomes]
rs73412479	0.92[AMR][1000 genomes]
rs73412484	0.92[AMR][1000 genomes]
rs73412488	0.92[AMR][1000 genomes]
rs73412490	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73414454	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73414486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73416403	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73416407	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73416479	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73416484	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73416487	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73416493	1.00[EUR][1000 genomes]
rs73418308	1.00[EUR][1000 genomes]
rs73418310	1.00[EUR][1000 genomes]
rs73418311	1.00[EUR][1000 genomes]
rs73418314	1.00[EUR][1000 genomes]
rs73418316	1.00[EUR][1000 genomes]
rs73418320	1.00[EUR][1000 genomes]
rs73418387	1.00[EUR][1000 genomes]
rs73418395	1.00[EUR][1000 genomes]
rs73418401	1.00[EUR][1000 genomes]
rs73420403	1.00[EUR][1000 genomes]
rs73420405	1.00[EUR][1000 genomes]
rs73420406	1.00[EUR][1000 genomes]
rs73420408	1.00[EUR][1000 genomes]
rs73420409	1.00[EUR][1000 genomes]
rs73420412	1.00[EUR][1000 genomes]
rs73420415	1.00[EUR][1000 genomes]
rs73420427	0.86[AMR][1000 genomes]
rs73420437	0.86[AMR][1000 genomes]
rs73420438	0.86[AMR][1000 genomes]
rs73420456	0.86[AMR][1000 genomes]
rs7342662	1.00[MEX][hapmap];0.86[AMR][1000 genomes]
rs7495403	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs751819	1.00[MEX][hapmap];0.86[AMR][1000 genomes]
rs8025600	1.00[MEX][hapmap];0.86[AMR][1000 genomes]
rs8027324	0.86[AMR][1000 genomes]
rs8034420	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8042179	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042662	0.86[AMR][1000 genomes]
rs9672808	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv1045556	chr15:45777396-45884854	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv904188	chr15:45801035-45941689	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45767200-45813600	Weak transcription	Psoas Muscle	Psoas
2	chr15:45769200-45812000	Weak transcription	Small Intestine	intestine
3	chr15:45769400-45813000	Weak transcription	Fetal Intestine Large	intestine
4	chr15:45771000-45813400	Weak transcription	Right Ventricle	heart
5	chr15:45771200-45814000	Weak transcription	Placenta	Placenta
6	chr15:45773200-45814000	Weak transcription	Pancreas	Pancrea
7	chr15:45774600-45812800	Weak transcription	Fetal Brain Male	brain
8	chr15:45775600-45812800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr15:45778000-45813000	Weak transcription	Brain Germinal Matrix	brain
10	chr15:45778400-45812600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr15:45778800-45806400	Weak transcription	Spleen	Spleen
12	chr15:45779400-45812800	Weak transcription	Fetal Brain Female	brain
13	chr15:45781800-45802400	Weak transcription	Primary B cells from cord blood	blood
14	chr15:45783800-45812800	Weak transcription	Fetal Kidney	kidney
15	chr15:45788000-45812800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:45788200-45810800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr15:45788600-45812800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:45790800-45813000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr15:45792200-45808400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr15:45792200-45813600	Weak transcription	HUVEC	blood vessel
21	chr15:45792200-45813600	Weak transcription	NH-A	brain
22	chr15:45792400-45802400	Weak transcription	HSMM	muscle
23	chr15:45792400-45812800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr15:45792400-45812800	Weak transcription	NHDF-Ad	bronchial
25	chr15:45792400-45812800	Weak transcription	Osteobl	bone
26	chr15:45792400-45813000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr15:45792600-45802800	Weak transcription	HSMMtube	muscle
28	chr15:45792600-45813200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:45792800-45812800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr15:45793000-45812800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr15:45795200-45804400	Weak transcription	Colonic Mucosa	Colon
32	chr15:45795600-45812800	Weak transcription	Fetal Heart	heart
33	chr15:45796800-45812800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr15:45797800-45803400	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr15:45797800-45813200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr15:45798400-45803600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr15:45798600-45803000	Strong transcription	Brain Anterior Caudate	brain
38	chr15:45798600-45813400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:45799200-45812800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr15:45799800-45802400	Strong transcription	Brain Hippocampus Middle	brain
41	chr15:45799800-45803000	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr15:45800000-45802400	Strong transcription	Primary B cells from peripheral blood	blood
43	chr15:45800000-45802600	Strong transcription	Liver	Liver
44	chr15:45800000-45803000	Strong transcription	Adipose Nuclei	Adipose
45	chr15:45800000-45803000	Strong transcription	Duodenum Mucosa	Duodenum
46	chr15:45800000-45803000	Strong transcription	Stomach Smooth Muscle	stomach
47	chr15:45800000-45803400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr15:45800000-45803800	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr15:45800200-45802400	Strong transcription	Fetal Stomach	stomach
50	chr15:45800200-45802800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain

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